| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 3,730,586 | Δ1 bp | coding (471/837 nt) | bglG → | transcriptional antiterminator of the bgl operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,730,585 | 0 | T | . | 75.6% | 351.4 / 191.1 | 172 | coding (470/837 nt) | bglG | transcriptional antiterminator of the bgl operon |
| Reads supporting (aligned to +/- strand): ref base T (42/0); new base . (130/0); total (172/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.92e-01 | |||||||||||
Only 100 of 173 total aligned reads displayed.
CATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTG > W3110S.gb/3730532‑3730605 | cATTATTGATAAACGGTTGGGCGTGTAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:92049/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGc > 1:1207170/1‑61 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTg > 1:1015314/1‑66 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGt > 1:1606730/1‑68 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGt > 1:236678/1‑68 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGt > 1:396759/1‑68 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGt > 1:123485/1‑68 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:340416/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:518147/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:514825/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:508572/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:501961/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:471674/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:453721/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:444028/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:371041/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:53799/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:340146/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:335335/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:290623/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:274476/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:239676/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:197721/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:193699/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:71180/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:996495/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:981484/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:96460/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:906082/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:899646/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:891595/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:830463/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:795857/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:746004/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:522188/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:699639/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:694269/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:685299/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:664637/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:625040/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:597470/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:570331/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:549563/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:250521/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1245369/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1393032/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1385443/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1383181/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1380056/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1377168/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1370240/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1318287/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1284559/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1273214/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1356510/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1171574/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1151006/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1126312/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1087386/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1077459/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1070191/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1068529/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1052395/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1027044/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:177045/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:146651/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1455444/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1525905/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1558251/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1445376/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1562560/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:1569734/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCAAGCATCTGGTc > 1:1433181/1‑69 (MQ=255)cATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGAGGGCTTTA‑TGCCATGc > 1:1507793/1‑61 (MQ=255)cATTATTGAAAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:329181/1‑69 (MQ=255)cATTATAGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTA‑TGCCATGCATCTGGTc > 1:502/1‑69 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGTGCTTTATTGCCTTGCATCTGGTCAGTg > 1:369598/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGt > 1:94165/1‑67 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:96117/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:238928/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1120589/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:860222/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:2720/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:812868/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1145888/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:316737/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1171035/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:122544/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:461358/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1259157/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:651190/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:594520/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:580139/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1296575/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:563202/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:179154/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1443526/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1428785/1‑68 (MQ=255) tGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTg > 1:1411801/1‑68 (MQ=255) tGATAAACGGTTGGGCGTCCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGt > 1:1400971/1‑67 (MQ=255) | CATTATTGATAAACGGTTGGGCGTGCAGTTACCGAAAGATGAAGTGGGCTTTATTGCCATGCATCTGGTCAGTG > W3110S.gb/3730532‑3730605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |