Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4180186	4180430	245	65 [0]	[0] 181	gspF	general secretory pathway component, cryptic

TGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGCC  >  W3110S.gb/4180117‑4180185                                                                     | tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:771996/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1002777/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:52532/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:557197/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:57152/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:593618/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:601731/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:606226/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:63669/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:65518/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:665078/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:666495/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:750570/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:755944/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:763398/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:771658/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:508986/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:81236/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:812743/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:819361/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:856029/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:858293/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:860315/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:865864/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:875848/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:878770/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:894064/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:897131/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:914351/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:927387/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:948637/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:994459/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:147054/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1043292/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1045674/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:104896/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1110391/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1230065/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:127056/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1293204/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1309625/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1352306/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1359546/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1366808/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1403175/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:144831/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1462915/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:447386/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:342416/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:441018/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:430848/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:410579/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:388451/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:360214/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1539243/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:292848/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:290631/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:22610/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:194651/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:185187/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:1600352/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCAGGGcc  >  1:862979/1‑69 (MQ=255) tGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACAGGGGcc  >  1:37698/1‑69 (MQ=255) tGAATGAGCTTGCTGCAGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:975412/1‑69 (MQ=255) tGAAAGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGcc  >  1:410242/1‑69 (MQ=255)                                                                     | TGAATGAGCTTGCTGCGGATTTTCTGCCGGTTTTCATTGTAATCAGCCAGCTTTTCCAACACCGGGGCC  >  W3110S.gb/4180117‑4180185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑