Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4504787	4505165	379	38 [0]	[0] 82	yjgX yjgX	ECK4266:JW5764+JW4234+JW5763:b4575; KpLE2 phage‑like element; hypothetical protein ECK4266:JW4234:b4275; KpLE2 phage‑like element; hypothetical protein, middle fragment

TATTCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCT  >  W3110S.gb/4504718‑4504786                                                                     | tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:664225/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:339536/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:362746/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:459442/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:496800/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:53651/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:542926/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:601579/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:60355/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:658209/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:279027/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:667410/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:688926/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:778381/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:793607/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:834019/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:842593/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:981982/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:989212/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1299081/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1079038/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1086489/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1121393/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1131215/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1135585/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1188855/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1205823/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1233112/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1274286/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1043428/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1331552/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1407649/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1429245/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1458805/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:1471024/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:162716/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:174757/1‑69 (MQ=255) tattCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCt  >  1:180945/1‑69 (MQ=255)                                                                     | TATTCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCT  >  W3110S.gb/4504718‑4504786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑