Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	731181	731357	177	73 [0]	[0] 72	rhsC	rhsC element core protein RshC

CAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGC  >  W3110S.gb/731112‑731180                                                                     | cAGCTATACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:175838/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTATACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1524988/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:537825/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:299842/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:300708/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:306892/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1015041/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:364506/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:379157/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:447778/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:46755/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:469106/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:475635/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:494004/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:499069/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:528387/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:341988/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:546660/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:564181/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:61873/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:652112/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:653790/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:712408/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:725573/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:762840/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:797178/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:827114/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:942311/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:966342/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:978288/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:985791/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:290045/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1053705/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1088368/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1154352/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1280288/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1286671/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1302551/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:137858/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1390221/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1392905/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1486953/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1495251/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1496110/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:242396/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:294003/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:26798/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:192365/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1591202/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1537892/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1504150/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1545531/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACAGACAGc  <  1:877/69‑1 (MQ=255) cAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACAGCATCACCATCACCGACAGc  <  1:803753/69‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:860706/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1499248/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1071530/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:303340/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1515462/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:934683/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:932621/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:870851/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:86417/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:710230/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1238685/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:332609/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:783748/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:495395/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:751970/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1298758/68‑1 (MQ=255)  aGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:218583/68‑1 (MQ=255)            ggCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:702317/58‑1 (MQ=255)                ggCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGc  <  1:1353311/54‑1 (MQ=255)                                                                     | CAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATCACCATCACCGACAGC  >  W3110S.gb/731112‑731180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑