Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1175081	1175137	57	97 [0]	[0] 169	mfd	transcription‑repair coupling factor

TCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTGG  >  W3110S.gb/1175012‑1175080                                                                     | tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:347245/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:551936/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:528090/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:5014/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:498351/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:486120/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:473169/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:447769/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:440241/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:384592/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:363403/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:352687/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:583952/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:341152/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:339221/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:33670/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:330145/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:300904/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:288849/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:272493/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:255089/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:253193/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:246604/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:76239/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:958847/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:941454/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:937026/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:928195/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:924045/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:868091/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:814616/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:795184/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:787850/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:77647/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:76461/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1004480/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:759674/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:704776/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:678143/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:656141/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:652517/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:633500/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:618036/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:608854/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:608487/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:584305/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1189441/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1354425/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1341747/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1334096/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1325975/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1307515/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1293193/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1261561/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1224930/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1223039/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1221865/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1202725/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:201284/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1168801/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1151112/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1150764/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1144984/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1125238/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1122790/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:111254/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1091721/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1067333/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1004066/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1377738/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:233024/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:167457/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1596935/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1536591/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1506687/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1500575/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1500484/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1499348/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1496311/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:149104/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1477023/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1405875/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1395126/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1487984/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1357724/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1381314/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1380793/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACATgg  <  1:174812/69‑1 (MQ=255) tCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCAGTGCTCCATCACCTgg  <  1:1113808/69‑1 (MQ=255) tCACTACCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:35558/69‑1 (MQ=255)  cACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:748718/68‑1 (MQ=255)  cACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1132019/68‑1 (MQ=255)  cACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1036511/68‑1 (MQ=255)     tCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:375618/65‑1 (MQ=255)                aaGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:806272/54‑1 (MQ=255)                                 gccgcgcGTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:1390762/37‑1 (MQ=255)                                   cgcgcgTGGCGTATTCGCCGTGCTCCATCACCTgg  <  1:960418/35‑1 (MQ=255)                                                                     | TCACTCCCCATCGGGAAGAGATCCAGCAACGCGCCGCGCGTGGCGTATTCGCCGTGCTCCATCACCTGG  >  W3110S.gb/1175012‑1175080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑