Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1272716	1272831	116	63 [0]	[3] 72	chaA	calcium/sodium:proton antiporter

GCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGT  >  W3110S.gb/1272647‑1272715                                                                     | gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCATCGAGCTGGCGTTCATTTTGGt  <  1:1562828/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:593653/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:207976/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:262996/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:276621/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:286667/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:312101/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:32585/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:327069/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:343375/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:50063/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:505178/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:567873/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:586073/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1025234/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:678128/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:690805/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:710516/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:812652/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:851391/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:853088/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:864260/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:874833/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:897383/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:901475/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:925864/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:940216/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:976466/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1413420/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1014409/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1035031/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1063483/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1113690/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:113526/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1137853/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1192372/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1199427/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1239745/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1289921/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1339977/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1371748/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1478048/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1481295/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1514328/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1509951/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1594589/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1556571/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1586789/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1565612/69‑1 (MQ=255) gCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGGTCATTTTGGt  <  1:158029/69‑1 (MQ=255) gCCAGTAAAGCCGACAGGGGCATTCATGCTGTCGAGCAATGTCACCAGCGAGCTGCCGTTCATTTTGGt  <  1:19709/69‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:282660/68‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:282075/68‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:274896/68‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1067400/68‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:235668/68‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1531011/68‑1 (MQ=255)  ccAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:969307/68‑1 (MQ=255)   cAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:302139/67‑1 (MQ=255)          ggCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1175518/60‑1 (MQ=255)             gACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:1182024/57‑1 (MQ=255)             gACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTGTGGt  <  1:185352/57‑1 (MQ=255)                               gTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGt  <  1:626974/39‑1 (MQ=255)                                                                     | GCCAGTAAAGGCGACAGGGGCATTCATGCTGTCGAGCAATGTCTCCAGCGAGCTGGCGTTCATTTTGGT  >  W3110S.gb/1272647‑1272715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑