Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1851709	1852110	402	84 [0]	[0] 51	sppA	protease IV

GAAAGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTCGC  >  W3110S.gb/1851639‑1851708                                                                      | gAAAGTGAAAGCGATTGTCCTGCGTGTTAATAG‑CCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1186575/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGTGTTACCGCGTCTGAAGTGATTcgc  <  1:1210325/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCTCGTCTGAAGTGATTcgc  <  1:553520/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:427746/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:593739/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:535225/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:532262/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:521603/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:5155/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:464407/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:430618/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:605032/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:410240/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:361941/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:32670/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:310619/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:269062/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:212434/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:199924/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:161026/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1583737/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1004272/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:783789/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:994369/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:979593/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:932587/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:907528/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:894057/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:848007/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:793860/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:788218/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:785095/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:600238/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:769894/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:671150/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:654652/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:650358/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:644165/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:622803/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:61781/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:606693/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1572866/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1098334/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1295409/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1558880/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:127979/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1258100/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1254209/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1230824/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1145343/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1139926/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1104295/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1286739/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1083925/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1075234/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1062700/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1062507/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1054422/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1023979/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:102284/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1009673/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:100531/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1432756/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1543756/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1542138/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1539100/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1532780/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1472836/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1472347/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1471245/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1456523/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1303112/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1415914/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:138595/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1377538/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1362455/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1354455/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1352481/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1329692/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1327795/69‑1 (MQ=255)  aaaGTGAAAGCGATTGTCCTGCGTGCTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:360930/69‑1 (MQ=255)  aaaGAGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:1210995/69‑1 (MQ=255)   aaGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:682991/68‑1 (MQ=255)                   ccTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTcgc  <  1:808566/52‑1 (MQ=255)                                                                      | GAAAGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTTACCGCGTCTGAAGTGATTCGC  >  W3110S.gb/1851639‑1851708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑