Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1975510	1976137	628	80 [0]	[0] 125	cheA	fused chemotactic sensory histidine kinase (soluble) in two‑component regulatory system with CheB and CheY

ACAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATG  >  W3110S.gb/1975447‑1975509                                                               | ccAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:112395/62‑1 (MQ=255) aCAGCATTCAGCGGCAGTATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:341731/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCTAGGATg  <  1:76/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:253697/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:474299/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:460801/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:450104/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:409552/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:389542/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:357415/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:35388/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:315919/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:567635/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:251731/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:232928/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:22501/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:18313/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1596954/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1596581/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1583331/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1532234/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:798427/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:927952/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:922869/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:910747/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:899068/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:886097/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:885730/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:821501/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:812393/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:800106/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:478532/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:79662/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:788096/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:78372/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:737235/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:729766/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:643049/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:578931/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1527818/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1150892/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1270417/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1268185/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1245430/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:124016/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1239642/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1236318/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:121779/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:119141/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1152657/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1278049/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1147736/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1131161/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1115383/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:110510/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1095615/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1081426/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1067720/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1044959/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1039681/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1402007/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1475327/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1463308/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1461255/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1457616/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1491813/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:142033/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:141499/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1402137/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1397301/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1390748/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1386013/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1365360/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:134721/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1334526/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1300500/63‑1 (MQ=255) aCAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1022508/63‑1 (MQ=255)  cAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:477492/62‑1 (MQ=255)          aGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATg  <  1:1522279/54‑1 (MQ=255)              gCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGTTg  <  1:1450921/50‑1 (MQ=255)                                                               | ACAGCATTCAGCGGCAGAATGAAAACTTCATCCGCAACGCGTACGGACATGCCGTCGAGGATG  >  W3110S.gb/1975447‑1975509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑