Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1998241	1998379	139	94 [0]	[0] 29	[sdiA]	[sdiA]

GTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAA  >  W3110S.gb/1998172‑1998240                                                                     | gTCAGTAATATAAACCCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:978639/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGTACAGaa  <  1:3831/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:300955/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:575034/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:563016/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:541306/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:538155/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:475087/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:458313/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:429033/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:384777/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:358489/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:630205/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:289553/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:281103/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:258049/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:255684/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:253433/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:226107/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:178954/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:162607/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1589554/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:752273/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:981129/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:95428/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:918040/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:888097/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:860185/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:841355/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:837418/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:793337/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:783021/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:763691/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:598284/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:749838/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:749415/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:743555/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:727525/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:715501/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:714915/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:694343/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:64370/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:22446/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1222689/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1343137/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1317697/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1317302/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1312807/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1310665/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1305269/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1297619/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1278229/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1274006/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1237151/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:156880/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1221324/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1201306/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1185853/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1182183/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1171359/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1141327/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1067029/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1056667/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1047087/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1379581/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1572134/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:156132/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1558927/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1558674/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1525123/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1513486/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1506788/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1504571/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1494678/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1454406/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1363439/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1390497/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1418325/69‑1 (MQ=255) gTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1451264/69‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1244536/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1506653/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:265408/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:738110/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:784660/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:292650/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:561978/68‑1 (MQ=255)  tCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTGTGCATCTGGCACGCAGGACAGaa  <  1:436025/68‑1 (MQ=255)        atatAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1254535/62‑1 (MQ=255)        atatAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1076375/62‑1 (MQ=255)                       aTAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1468124/47‑1 (MQ=255)                         aGCGGGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:549084/45‑1 (MQ=255)                            gTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1332172/42‑1 (MQ=255)                            gTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGaa  <  1:1001041/42‑1 (MQ=255)                               ccTTTCAGCCTTTTTTTGAATCTGGCACGCAGGACAGaa  <  1:1069950/39‑1 (MQ=37)                                                                     | GTCAGTAATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAA  >  W3110S.gb/1998172‑1998240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑