Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2507914	2508235	322	82 [0]	[0] 95	ypdD	fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component

CAAAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGT  >  W3110S.gb/2507852‑2507913                                                              | caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGCGt  <  1:685377/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:448992/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:544098/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:543308/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:521176/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:50652/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:493018/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:48788/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:487336/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:46775/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:61741/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:412372/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:408305/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:356717/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:344687/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:34189/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:304652/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1023479/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:278921/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:265257/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:837758/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:992191/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:990289/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:929665/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:927034/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:919401/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:909561/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:907328/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:865381/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:852146/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:568210/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:83754/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:837516/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:822806/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:80458/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:781647/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:752445/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:665912/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:292340/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1173109/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:25308/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1387214/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:13799/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1366169/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1323272/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1282328/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1257090/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1243920/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1208829/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1175754/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1405104/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:117005/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1146564/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1141265/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1136813/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1121949/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1118802/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1082804/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1082495/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1060007/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1419391/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:223907/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:218130/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:198876/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:191342/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:169832/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1596277/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1596090/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1549699/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1542676/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1542136/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1539599/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1534975/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1521480/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:1509081/62‑1 (MQ=255) caaAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGAAAAGGCGGTGAGt  <  1:1417459/62‑1 (MQ=255)  aaaGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:434035/61‑1 (MQ=255)  aaaGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:626496/61‑1 (MQ=255)            tcCAGCGCCAGAAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGgtgtgt  <  1:1455702/51‑1 (MQ=255)                   ccAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:530038/44‑1 (MQ=255)                       cagTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:450730/40‑1 (MQ=255)                         gTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGt  <  1:788424/38‑1 (MQ=255)                                                              | CAAAGATATTCTCCAGCGCCAGCAGTGGGCGAACGTCTTCTTCCGGCGTAAAGGCGGTGAGT  >  W3110S.gb/2507852‑2507913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑