Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	161600	161719	120	55 [0]	[0] 53	ligT	2'‑5' RNA ligase

CGTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCA  >  W3110S.gb/161531‑161599                                                                     | cgggtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:240035/66‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:649262/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:274361/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1029024/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:345636/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:369798/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:400212/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:401813/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:460706/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:477634/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:50441/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:531139/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:569370/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:310270/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:663979/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:699998/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:763575/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:773351/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:806171/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:819041/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:834135/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:836937/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:937896/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:98717/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:994768/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1379535/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1032897/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1074279/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1111411/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1173448/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1216448/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1243867/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1280967/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1354886/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1382800/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1592696/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1397713/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1583288/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1418171/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1395837/69‑1 (MQ=255) cgTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:145111/69‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:453677/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1588948/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1587186/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:119011/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1565862/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:813360/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1366824/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:257230/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:555921/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:515339/68‑1 (MQ=255)  gtgtAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGGGAACTCCGTCACCGCATACGACCa  <  1:1382349/68‑1 (MQ=255)                      ggCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:1373359/48‑1 (MQ=255)                        cAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:751053/46‑1 (MQ=255)                            cGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCa  <  1:846000/42‑1 (MQ=255)                                                                     | CGTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCA  >  W3110S.gb/161531‑161599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑