Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2667338	2667810	473	45 [0]	[0] 20	[hcaR]–[hcaE]	[hcaR],[hcaE]

CTGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCG  >  W3110S.gb/2667292‑2667337                                              | cTGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:212832/46‑1 (MQ=255) cTGAACAATTATCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:886261/46‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:633339/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:224161/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:237796/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:246417/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:374420/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:438940/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:476609/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:514958/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:517665/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:561305/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:619422/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:207288/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:659100/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:715982/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:809518/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:845634/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:876787/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:949468/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:95093/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:960241/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:973824/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1353419/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1229354/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:124319/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1279099/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1281182/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1308760/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1308970/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1309145/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1313859/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:131647/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1351341/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1134833/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1361410/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1400872/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1422249/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1429968/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:144678/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:146378/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1534305/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:1596234/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:168742/45‑1 (MQ=255)  tGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCg  <  1:189651/45‑1 (MQ=255)                                              | CTGAACAATTTTCCGCGCCCGTAATTTGGCATTTTCCGCTTGTTCG  >  W3110S.gb/2667292‑2667337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑