Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2812691	2812715	25	57 [0]	[2] 40	emrB	multidrug efflux system protein

AGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTG  >  W3110S.gb/2812624‑2812690                                                                   | aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:656932/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:103498/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:428283/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:470643/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:512998/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:529931/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:539939/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:540848/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:5500/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:621640/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:634503/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:640456/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:640810/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:644803/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:3880/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:658676/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:670542/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:71710/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:746652/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:822485/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:910379/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:918071/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:923089/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:932946/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:936612/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:994232/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:996743/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1373297/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1103372/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1116518/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1128314/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:113383/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1230087/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1236662/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1253757/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1260598/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1295696/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1299946/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:382181/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1374457/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1494962/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:369723/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:342070/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:293072/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:226330/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:191328/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:189208/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:150028/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1386186/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:148902/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1432562/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1392112/67‑1 (MQ=255) aGGGCTTGGGATGACGCAACAGCAGGCAACAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:731330/67‑1 (MQ=255)  gggCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:1359194/66‑1 (MQ=255)  gggCGTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCTGCAGATCACCAATCAGGGGCTg  <  1:1470449/66‑1 (MQ=255)       tGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:939165/61‑1 (MQ=255)               cGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTg  <  1:682971/53‑1 (MQ=255)                                                                   | AGGGCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTG  >  W3110S.gb/2812624‑2812690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑