Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3039963	3040057	95	86 [0]	[0] 14	[ygfZ]	[ygfZ]

GAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAC  >  W3110S.gb/3039894‑3039962                                                                     | gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:337960/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:505192/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:490890/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:471406/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:437719/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:42447/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:394077/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:386693/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:365189/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:349809/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:515920/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:317449/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:306204/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:300156/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:292299/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:277325/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:253678/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:219620/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:202416/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:189594/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:680815/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:988527/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:921932/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:863609/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:788109/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:762753/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:735770/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:725328/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:709487/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:681374/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1048885/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:670603/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:666973/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:654870/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:618633/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:602345/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:560052/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:557317/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:554903/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:525673/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1211287/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:136532/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1353029/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1350090/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1344086/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1325993/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1296791/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1274785/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1257913/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1228183/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:169955/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1205563/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1174452/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1124153/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:111550/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1108828/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1099004/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1074070/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1072728/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1452526/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1554718/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1547868/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1531297/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1515032/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1503029/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1478126/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1385576/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1469318/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1465796/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:144201/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1427807/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1419211/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1605129/69‑1 (MQ=255) gAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:185160/69‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCTTTAATACGCCGTTAAGCAACTCAGGAc  <  1:467126/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1218350/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:227856/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:108378/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1023752/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:757237/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:3737/68‑1 (MQ=255)  aaaGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1377678/68‑1 (MQ=255)      cACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTAAAGCAACTCAGGAc  <  1:511100/64‑1 (MQ=255)                     aTAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:532620/49‑1 (MQ=255)                     aTAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:1391740/49‑1 (MQ=255)                      tAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAc  <  1:929796/48‑1 (MQ=255)                                                                     | GAAAGCACTTGCATTGCCTCATAGCTCTTTTACCATTAGTCATTAATACGCCGTTAAGCAACTCAGGAC  >  W3110S.gb/3039894‑3039962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑