Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3089768	3090187	420	40 [0]	[0] 247	[yggJ]	[yggJ]

CGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGG  >  W3110S.gb/3089699‑3089767                                                                     | cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:600958/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:414694/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:427683/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:448914/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:494342/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:506412/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:512826/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:551091/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:5553/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:600016/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:406558/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:603210/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:740128/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:860805/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:895504/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:915685/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:934380/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:945192/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:977022/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:978980/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:380094/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1182317/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1182830/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1211401/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1240322/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1264493/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1375896/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1479872/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1522438/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1538044/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1603635/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:183690/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:297047/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:32989/69‑1 (MQ=255) cgAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:10396/69‑1 (MQ=255)  gAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:225069/68‑1 (MQ=255)  gAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:361536/68‑1 (MQ=255)  gAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1144598/68‑1 (MQ=255)                          gATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:191095/44‑1 (MQ=255)                          gATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg  <  1:1186841/44‑1 (MQ=255)                                                                     | CGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGG  >  W3110S.gb/3089699‑3089767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑