Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3188084	3188462	379	55 [0]	[0] 36	yqiG	predicted outer membrane usher protein

ACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTG  >  W3110S.gb/3188016‑3188083                                                                    | aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCTGTTg  >  1:1472971/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:80454/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1031581/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:399157/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:404976/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:422471/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:433550/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:449940/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:566352/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:636036/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:718544/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:763673/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:777707/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:793181/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:376356/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:808743/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:817087/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:821646/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:823695/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:853887/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:864360/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:883556/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:905377/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:953352/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:977815/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:980263/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:981152/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1402504/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1032991/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1063128/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1138911/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:114225/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1153417/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1153701/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1162030/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1163756/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1234768/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1241556/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1256143/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:131048/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:36535/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1518204/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1518681/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1529818/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1556093/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1557137/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1584253/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:1600471/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:167035/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:24134/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:314943/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:341060/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCGTTTTAAGATCGACGCAGACGGCACTGAAGATATTCCGTTg  >  1:549752/1‑68 (MQ=255) aCGACTATAGCGGTAGTGCTGACTCGCCTTTTATGATCGACGCAGACGTCACTGAAGATATTCCGTTg  >  1:819241/1‑68 (MQ=255) aCGACTATAGAGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGTCACTGAAGATATTCCGATg  >  1:584622/1‑68 (MQ=255)                                                                    | ACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTG  >  W3110S.gb/3188016‑3188083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑