Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3216319	3216327	9	48 [0]	[0] 60	aer	fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component

TCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCA  >  W3110S.gb/3216259‑3216318                                                            | tCACCATCGCCGCCACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1186612/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:515178/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:179202/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:200754/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:228141/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:232756/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:239458/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:274763/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:356546/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:364820/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:398583/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:401703/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:473322/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:4891/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1629/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:672360/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:723853/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:764494/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:823350/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:827518/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:883779/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:910493/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:923627/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:975772/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:990440/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1327675/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1036081/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1058007/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1088461/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1149751/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1173741/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1175556/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1179066/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1236278/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1247036/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1248507/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1309365/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1007912/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1346532/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1386157/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1416529/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1430596/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1499947/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1500917/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1520700/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1572772/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1583728/1‑60 (MQ=255) tCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCa  >  1:1591626/1‑60 (MQ=255)                                                            | TCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCA  >  W3110S.gb/3216259‑3216318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑