Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3216396	3216667	272	62 [0]	[0] 134	aer	fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component

CATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCG  >  W3110S.gb/3216328‑3216395                                                                    | cATCCACTGCAGGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:358507/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGATAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1133584/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:387506/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1571686/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:158022/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1593621/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1597182/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1605531/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:178614/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:190996/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:206546/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:210464/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:256172/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:306162/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:312183/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:356556/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:385284/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1010490/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:474845/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:524824/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:542355/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:55008/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:594434/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:624406/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:667615/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:721550/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:726811/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:762352/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:779887/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:800320/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:822932/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1269633/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1005015/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1043945/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:105094/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1067620/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:10754/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1079687/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1113124/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1167291/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:118933/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1189685/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1190678/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1206909/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1243674/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1251896/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1274059/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1278571/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1307566/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1318919/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1334654/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1355249/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:13671/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1373142/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1388272/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1404339/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1439163/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1455295/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1465148/68‑1 (MQ=255) cATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCACCGTTGAATGGCTAATCTGGGCg  <  1:1470398/68‑1 (MQ=255) aaTCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:1553301/67‑1 (MQ=255)                           aGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCg  <  1:763720/42‑1 (MQ=255)                                                                    | CATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCG  >  W3110S.gb/3216328‑3216395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑