Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3317282	3317323	42	95 [0]	[0] 114	nusA	transcription termination/antitermination L factor

AAAATCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTTTGTTG  >  W3110S.gb/3317214‑3317281                                                                    | aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGTCGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1270187/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:485284/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:627831/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:61568/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:587314/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:584565/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:583525/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:581486/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:578763/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:570089/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:530773/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:517889/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:64604/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:473606/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:44809/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:441097/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:438295/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:429569/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:418971/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:383967/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1002562/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:333284/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:311858/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:78378/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:976038/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:963924/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:943277/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:940415/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:883168/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:867783/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:850881/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:799990/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:797535/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:789870/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:638603/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:748164/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:745618/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:733551/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:726749/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:711837/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:699622/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:670137/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:661739/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:661137/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:344735/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1190429/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1344088/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1309077/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1269369/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1267587/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1262165/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1253779/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:122864/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1206164/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1204482/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1200087/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:28021/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1172763/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1167826/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:113211/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1100268/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1061577/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1052465/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1049193/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:102165/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1008031/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1400372/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:294855/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:262171/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:260082/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:238708/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:227947/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:220525/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:207080/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:206119/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:197956/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:188298/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1433242/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1360110/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1401435/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1485719/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1516099/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1520166/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1526425/68‑1 (MQ=255) aaaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGGCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:887314/68‑1 (MQ=255) aaaaTCACAGCTTTTGCGATCGATCTGTACGAGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:766897/68‑1 (MQ=255)  aaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1166335/67‑1 (MQ=255)  aaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1562492/67‑1 (MQ=255)  aaaTCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1277783/67‑1 (MQ=255)      cACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:352141/63‑1 (MQ=255)           cTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:1316109/58‑1 (MQ=255)                   atcgatcTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:399687/50‑1 (MQ=255)                    tcgatcTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:723428/49‑1 (MQ=255)                            tACGCGGACGTCTATCTCTTGTTCATATTTTTTCTttgttg  <  1:951980/41‑1 (MQ=255)                             aCGCGGACGTCGATCTCTTGTTCATATTTTTTCTttgttg  <  1:78727/40‑1 (MQ=255)                                                                    | AAAATCACCGCTTTTGCGATCGATCTGTACGCGGACGTCGATCTCTTGTTCATATTTTTTCTTTGTTG  >  W3110S.gb/3317214‑3317281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑