Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3495774	3496067	294	95 [0]	[0] 244	ptsA	fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component

CGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGA  >  W3110S.gb/3495705‑3495773                                                                     | cGCTCCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1413846/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGACTCCGCCAACGGa  <  1:1568846/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:367102/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:650348/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:631231/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:608495/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:590655/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:529045/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:523807/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:513282/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:43476/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:40820/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:379552/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:652229/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:366314/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:352917/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:344094/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:309263/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:300109/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:270303/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:250879/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:240364/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:234485/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1011761/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:810075/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:987935/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:923047/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:921294/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:914875/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:909449/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:859160/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:854547/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:850464/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:846711/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:840763/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:839194/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:231393/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:78671/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:750644/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:746639/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:743385/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:734773/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:718904/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:717188/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:717111/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:696604/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:669694/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1202935/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1433406/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1427093/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:230983/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1337191/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1335859/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1282732/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1275420/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1245761/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1228508/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1215315/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1405154/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1200011/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1188455/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1187162/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1165643/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1157005/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1148590/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1091108/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1043671/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1020013/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1016944/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:18055/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:156004/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:156597/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1534060/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1532882/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1569845/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1599247/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1531798/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1605032/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:209044/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1531145/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1458364/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1498187/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1490446/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1488059/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1478652/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTAGAATCCGCCAACGGa  <  1:442167/69‑1 (MQ=255) cGCACCAGCGCACCGGGCGAAAGCGAGTTGAACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:823510/69‑1 (MQ=255)  gCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:224592/68‑1 (MQ=255)  gCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1550709/68‑1 (MQ=255)  gCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:391869/68‑1 (MQ=255)  gCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1217226/68‑1 (MQ=255)  gCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1313997/68‑1 (MQ=255)   cACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:42888/67‑1 (MQ=255)    aCCAGCGCACCGGGCGAAAGCGAGGTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1249786/66‑1 (MQ=255)                ggCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGa  <  1:1259271/54‑1 (MQ=255)                                                                     | CGCACCAGCGCACCGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGA  >  W3110S.gb/3495705‑3495773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑