Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3661268	3661877	610	77 [0]	[0] 24	[rffA]–[rffC]	[rffA],[rffC]

TCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACGCA  >  W3110S.gb/3661202‑3661267                                                                  | tCAGCGTTTCGTCGATGTTCATTGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:345598/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:33452/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:452238/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:436369/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:401249/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:386259/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:369769/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:367594/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:365551/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:518537/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:323253/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:321101/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:317536/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:313044/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:229130/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1074467/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:206453/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:203713/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:788352/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:975955/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:944332/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:93891/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:920591/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:888403/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:839773/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:817226/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:796867/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:219605/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:764735/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:716039/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:696528/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:652269/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:649288/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:623365/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:597889/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:538864/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1204460/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1320050/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1318302/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1271104/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1266226/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:126550/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1246421/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1232970/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1221078/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1602663/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1181174/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1176162/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1157805/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1139988/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1110983/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:108167/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1078228/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1400518/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:195016/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1601012/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1557676/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1528070/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1519826/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1507788/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:150684/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:150641/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:149049/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1483906/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1462316/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1460635/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1455244/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1400714/66‑1 (MQ=255) tCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1323144/66‑1 (MQ=255) tCAGCGTTTCGGCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:940069/66‑1 (MQ=255)  cAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1210874/65‑1 (MQ=255)  cAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:781057/65‑1 (MQ=255)            tcgATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:903196/55‑1 (MQ=255)             cgATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:428947/54‑1 (MQ=255)                     aTGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:1104919/46‑1 (MQ=255)                             cGGGCGAACATCCACAAAAACGATTTTTGCGCCACtca  <  1:589527/38‑1 (MQ=255)                             cGGGCGAACATCCACAAAAACGATTTTTGCGCCACgca  <  1:662325/38‑1 (MQ=255)                                                                  | TCAGCGTTTCGTCGATGTTCATGGTGTCCGGGCGAACATCCACAAAAACGATTTTTGCGCCACGCA  >  W3110S.gb/3661202‑3661267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑