Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4408124	4408337	214	45 [0]	[0] 49	hflC	modulator for HflB protease specific for phage lambda cII repressor

GAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGT  >  W3110S.gb/4408338‑4408388 |                                                   gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGaaa                  >  1:1061469/1‑35 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACg   >  1:987069/1‑50 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACg   >  1:385521/1‑50 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:796921/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:470029/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:532599/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:58178/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:641675/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:649753/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:652166/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:659697/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:662151/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:688169/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:699460/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:796221/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:46362/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:812454/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:833316/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:840705/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:879302/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:907192/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:915995/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:943621/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:975612/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:976372/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1003438/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:16929/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1175774/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1180634/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1293408/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1335220/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1343948/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1431236/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:148084/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1481830/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1493349/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1576107/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:1175254/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:22850/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:299732/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:301527/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:322839/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:10859/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:39379/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:405656/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:431075/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:446552/1‑51 (MQ=255) gAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATAGGTCGCCAGGACGt  >  1:1366281/1‑51 (MQ=255) gAAACGT‑AGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGt  >  1:381887/1‑50 (MQ=255) |                                                   GAAACGTAAGTTCTCTGACCGTCTGCGTTCTGAAATTGGTCGCCTGGACGT  >  W3110S.gb/4408338‑4408388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑