Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1085843	1085860	18	91 [0]	[0] 94	phoH	conserved hypothetical protein with nucleoside triphosphate hydrolase domain

CTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAAGCA  >  W3110S.gb/1085861‑1085913 |                                                     ctctCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1277563/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAgg                  >  1:216824/1‑37 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGagag        >  1:831845/1‑47 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagcg  <  1:1214696/53‑2 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:473771/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:678275/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:662038/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:661096/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:661093/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:659246/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:640795/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:638385/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:548534/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:538656/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:716326/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:43981/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:42560/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:400777/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:395650/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:366109/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:349599/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:341479/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:34100/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:33506/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:327842/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:298830/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:86144/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:98972/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:982626/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:964040/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:954632/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:94006/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:92982/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:92583/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:915390/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:893252/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:889275/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:862011/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:678452/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:851434/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:844961/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:835631/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:83339/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:82148/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:795162/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:793740/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:753512/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:255197/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:711498/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1126639/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:135005/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1324594/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1317387/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1316969/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1257587/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1231936/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:121645/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1189334/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1188134/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1187036/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1160981/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:135544/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1118515/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1103061/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1092778/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1090694/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1088194/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1087882/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1042644/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1026575/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1019825/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1007907/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1527560/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1002037/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:238576/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:229594/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:219851/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:204057/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1597322/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1588088/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1564282/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:156360/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1529354/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:276636/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1512937/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1501892/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1484601/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1479021/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1445821/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1445645/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1443617/1‑53 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1422739/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  <  1:1380812/53‑1 (MQ=255) cTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAagca  >  1:1357436/1‑53 (MQ=255) |                                                     CTCGCGCGAAATGAAGCGCAATTGCACTATCTGAAGGCTATTGAGAGTAAGCA  >  W3110S.gb/1085861‑1085913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑