Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1248347	1248864	518	173 [0]	[0] 54	treA	periplasmic trehalase

GCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGC  >  W3110S.gb/1248865‑1248931 |                                                                   gcctgcACCTATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1130145/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:692332/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:347594/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:351008/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:400419/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:414771/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:42404/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:428785/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:531869/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:531884/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:555439/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:57360/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:603895/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:660111/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:66205/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:340437/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:721062/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:729967/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:753867/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:755275/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:770387/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:829626/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:849294/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:891101/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:89777/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:937108/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:949767/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1292604/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1010557/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1013556/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1026293/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1026654/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1060271/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1091983/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1112161/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1163713/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1190178/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1221701/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1257217/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1285228/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1003556/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1303592/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1351054/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1363566/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1387999/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1396671/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1407932/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1526400/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1597804/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:1600378/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:193253/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:301458/67‑1 (MQ=255) gcctgcACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:306947/67‑1 (MQ=255) gcctgcACCGATAGCGCAGAGAAACTCAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGc  <  1:743822/67‑1 (MQ=255) |                                                                   GCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAGGCTGGAATTAACGCCATTTTTTGCGGGC  >  W3110S.gb/1248865‑1248931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑