Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2001680	2001725	46	16 [0]	[0] 52	[fliY]	[fliY]

TTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCA  >  W3110S.gb/2001726‑2001794 |                                                                     ttGGTCACATCAGCACCAAACCATTTTTCGGATAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1156679/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTg                       >  1:362608/1‑48 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:502444/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:18784/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:194331/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:213105/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:26590/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:267376/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:351591/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:374122/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:446100/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:451850/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:468445/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:469668/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:501174/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:169653/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:579033/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:663984/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:700928/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:717601/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:744485/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:797738/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:818334/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:858701/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:865371/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:923421/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:977011/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1283318/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1019082/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1022160/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1022849/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1023812/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1063610/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1064299/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:108438/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1177427/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1183325/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1228255/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1244769/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:101896/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1340194/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:141311/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1418356/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1483699/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1515810/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1530811/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1542666/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1577357/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1578183/1‑69 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:163424/1‑69 (MQ=255) ttGGTCACATCAGCACCAAAACATTTTTCGGAAAGTGCTTGCAGAGTGACATCTTTTTGCATATCCGc   >  1:1220902/1‑68 (MQ=255) ttGGTCACAGCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCa  >  1:1459851/1‑69 (MQ=255) |                                                                     TTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCA  >  W3110S.gb/2001726‑2001794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑