Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003294	2003472	179	28 [0]	[0] 79	fliA	RNA polymerase, sigma 28 (sigma F) factor

CTTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCG  >  W3110S.gb/2003473‑2003540 |                                                                    ctTCGCGCCACTCCTCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1414710/68‑1 (MQ=255) ctTCGCGCCACTCATCGTGGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:74515/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:440480/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:649818/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:643246/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:623228/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:618783/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:58571/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:561595/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:486514/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:461649/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:675301/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:436606/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:432969/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:40937/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:404741/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:384735/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:371690/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:37044/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:34049/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:328264/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:836709/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:99778/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:993138/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:973865/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:963615/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:950147/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:925018/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:849048/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:847383/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:846381/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:318275/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:820507/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:818062/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:807562/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:768526/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:760852/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:747542/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:721437/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:715522/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1249376/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1327652/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1324366/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1322924/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1316015/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1314279/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:129862/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:129267/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1282530/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1275937/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1334944/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:123027/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:121544/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1210650/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1147848/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1116695/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1100503/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1091815/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1081362/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1045004/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1521108/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:30272/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:300408/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:261173/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:246993/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:208980/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:162788/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:159805/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1540203/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1522806/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1000142/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:151941/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1506549/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:142402/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1402645/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1359074/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1351577/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCg  <  1:1348040/68‑1 (MQ=255) ctTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATCGGTGTCGAGCAACATTTGGCGATAATCg  <  1:581765/68‑1 (MQ=255) |                                                                    CTTCGCGCCACTCATCGTAGGAGAAGAGCTGGCTGTTATTGGTGTCGAGCAACATTTGGCGATAATCG  >  W3110S.gb/2003473‑2003540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑