Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3005677	3005899	223	185 [0]	[0] 63	ygeW	conserved hypothetical protein

TGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGA  >  W3110S.gb/3005900‑3005953 |                                                      tGCACTGCCTGCCAGCTGATATCTGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:179473/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGATGTGa  <  1:120580/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:437489/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:679745/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:66762/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:65102/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:559726/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:551072/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:543319/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:503811/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:461682/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:699766/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:406053/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:336662/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:317223/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:282037/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:277076/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:244135/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:703510/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:744430/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:757521/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:792324/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:814220/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:863895/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:870332/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:880696/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:90588/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:912023/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:914285/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:947730/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:952618/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:970207/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1392904/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1016628/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1026292/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1090754/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1166069/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1173422/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:118426/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1219910/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1252030/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1272011/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:128284/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1312104/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1339329/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1345390/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1363920/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1370256/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:25877/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1409140/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:144290/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1450793/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1455893/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1509804/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1563240/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1583905/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1590332/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:183177/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:188182/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:21700/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:242384/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGa  <  1:1011695/54‑1 (MQ=255) tGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGT‑AAGAAGGTGAAGTGa  <  1:505635/53‑1 (MQ=255) |                                                      TGCACTGCCTGCCAGCTGATATCAGCGGCGTATCCTGTAAAGAAGGTGAAGTGA  >  W3110S.gb/3005900‑3005953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑