Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3199312	3200266	955	26 [0]	[0] 90	[ygiF]–[htrG]	[ygiF],[htrG]

CGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTCG  >  W3110S.gb/3200267‑3200313 |                                               cGGGTTAAAAGAAGAAAATCGGAAACTGAAAAACGAGCTGATTGTcg  >  1:929005/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:481167/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:639153/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:628390/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:626148/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:595418/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:58805/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:586958/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:574571/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:573735/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:55415/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:530860/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:505353/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:707565/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:477934/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:473815/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:467072/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:453881/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:447908/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:441759/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:434819/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:429636/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:400143/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:883104/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:984248/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:975172/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:965506/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:953827/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:951448/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:931403/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:920562/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:914850/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:90811/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:900876/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:688269/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:837570/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:82880/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:827627/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:815041/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:81192/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:793790/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:792675/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:777224/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:76971/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:3740/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1333505/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1522059/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1521506/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1505096/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1499026/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1439125/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:142306/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1350886/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1343710/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:1343613/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:1339678/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:1524996/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:133045/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:127700/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:1176976/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:1158606/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1140931/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1119228/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1096707/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:1092715/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1025310/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1012165/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:28277/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:360291/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:342177/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:340897/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:339588/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:335372/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:315966/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:310949/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:307809/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  <  1:307166/47‑1 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:298617/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1007397/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:241354/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:226038/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:216843/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:184062/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:175194/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1570875/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1564928/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:156369/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1540041/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTcg  >  1:1525492/1‑47 (MQ=255) cGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTc   >  1:1185283/1‑46 (MQ=255) |                                               CGGGTTAAAAGAAGAAAATCAGAAACTGAAAAACGAGCTGATTGTCG  >  W3110S.gb/3200267‑3200313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑