Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 249801 249967 167 72 [0] [1] 107 fhiA ECK0230:JW5811:b0229; flagellar system protein, promoterless fragment

Only 100 of 107 total aligned reads displayed.

ATCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCC  >  W3110S.gb/249967‑250035
 |                                                                   
aTCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:564395/69‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCTTCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:244031/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGTGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1299903/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAACCCTCGGAAATACGCTCGGcc  <  1:384973/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:523796/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:552235/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:479369/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:470580/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:463117/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:456163/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:4457/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:444102/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:435982/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:434569/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:432930/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:416143/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:409378/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:393556/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:386347/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:383037/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:345877/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:333439/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:327709/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:314989/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:30628/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:262737/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:252917/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:797813/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1000672/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:974702/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:95075/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:911778/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:90393/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:893473/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:891179/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:887806/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:862024/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:861759/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:857167/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:551791/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:781492/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:774197/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:730953/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:698331/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:687423/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:679099/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:668231/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:66735/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:618343/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:604738/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:980000/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1146176/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1335811/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1320432/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1305398/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1289154/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1266948/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1264862/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1253742/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1239434/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1201886/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1198684/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:117109/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1148464/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1348033/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1132377/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1131181/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1123812/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1113320/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1101155/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1076134/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1070123/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1065775/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1061729/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1057571/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1007649/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:158400/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:213207/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:204563/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:20420/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:187529/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:186814/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:180018/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:172808/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:172447/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:172270/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:24836/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1582333/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1568337/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1551892/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1536480/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1514828/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:144084/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1436200/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1419247/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1408223/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1381468/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1378913/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGATCGGcc  <  1:206901/68‑1 (MQ=255)
 tCGCCATCTGTTTGCCCGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGcc  <  1:1589562/68‑1 (MQ=255)
 |                                                                   
ATCGCCATCTGTTTGCCGGGCATCGCGTCTAAGGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCC  >  W3110S.gb/249967‑250035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑