Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3681367	3681407	41	163 [0]	[0] 66	ilvD	dihydroxyacid dehydratase

AGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTC  >  W3110S.gb/3681408‑3681475 |                                                                    aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGCCGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1165309/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGGTTTTTCGGCGTCCAGGCTTTGTc  <  1:502849/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGTTTTGTc  <  1:210/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:422712/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:564761/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:556099/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:549033/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:538176/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:471283/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:465480/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:607839/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:385268/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:349103/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:288838/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:288395/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:276118/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:231358/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:192133/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:17588/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:617036/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:628245/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:644862/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:657989/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:690616/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:723838/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:797111/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:829823/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:842204/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:876100/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:892321/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:893604/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:900361/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:957251/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:983113/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1354299/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1012948/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1033197/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1038454/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1087372/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1105370/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1108289/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1114319/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1114708/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1170885/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1242361/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1305017/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1310824/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1334395/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1348108/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1010585/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1382386/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1386529/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1394876/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1396683/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1419317/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1423210/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1435056/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1461467/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1464714/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1483488/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1500812/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1552406/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1562235/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1583169/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1605879/68‑1 (MQ=255) aGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGATCACGATTTTTCGGCGTCCAGGCTTTGTc  <  1:1069681/68‑1 (MQ=255) |                                                                    AGGCTGGCATAAGCACGCAGGGCAAAGGAGACCTGACGTTCACGATTTTTCGGCGTCCAGGCTTTGTC  >  W3110S.gb/3681408‑3681475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑