Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3785565	3785933	369	155 [0]	[0] 66	emrD	multidrug efflux system protein

GACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAT  >  W3110S.gb/3785934‑3786002 |                                                                     gACGCGTTTCCGGCATCCAGCGTGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:740278/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:463907/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:677675/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:673470/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:666076/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:620489/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:590694/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:578636/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:498285/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:717712/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:448618/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:446983/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:431805/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:362624/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:355431/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:348319/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1014848/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:715026/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:329975/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:720386/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:726958/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:728497/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:731782/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:73666/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:751567/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:835035/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:845072/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:908846/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:927960/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:946141/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:953478/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:964832/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:99350/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:130956/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:145486/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1453241/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1411870/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1355963/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1354949/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1326914/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1323598/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1319028/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1473953/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1284301/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1266393/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1264249/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1219917/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1205086/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1190936/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1160145/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:325459/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1490202/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1508960/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:1523262/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:177980/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:18732/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:202710/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:219365/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:219965/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:254875/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:265703/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:268420/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:270968/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:282638/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:313061/69‑1 (MQ=255) gACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGGCACACCAGCACAAAGAACCAACAAAAAGAGAt  <  1:443810/69‑1 (MQ=255) |                                                                     GACGCGTTTCCGGCATCCAGCGGGCCATACTGAAGGTCACACCAGCACAAAGAACCAACAAAAAGAGAT  >  W3110S.gb/3785934‑3786002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑