Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3858958	3859081	124	185 [0]	[0] 76	yibK	predicted rRNA methylase

CGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACGG  >  W3110S.gb/3859082‑3859146 |                                                                 cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGCCGAAAGCCGGTATTAGCGCAAAGACgg  >  1:427852/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGAc                            >  1:1570231/1‑39 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTTGCGCAAAGACgg  >  1:409149/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAg             >  1:287246/1‑54 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGAc    >  1:413418/1‑63 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:52259/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:764274/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:726207/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:676576/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:621497/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:604649/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:602630/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:539386/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:527383/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:787335/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:458004/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:443496/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:423243/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:403030/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:36370/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:83519/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:989250/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:984669/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:964702/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:935733/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:904700/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:902636/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:877227/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:843823/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:837843/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:354979/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:833877/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:832603/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:826891/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:824920/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:822474/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:81829/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:814302/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:797446/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1179742/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1330055/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1326042/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:129577/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:1286684/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1256334/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1235728/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:1205913/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1204926/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1196035/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1352688/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1155850/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1130365/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1106902/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1105512/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1103502/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:1074548/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1037879/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1033672/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:200869/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:292564/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:280577/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:268719/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:250177/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:243262/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:242276/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:219884/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:206281/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1024667/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:163576/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:152866/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:150190/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:1433443/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  <  1:1405403/65‑1 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACgg  >  1:1394410/1‑65 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACg   >  1:552068/1‑64 (MQ=255) cGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACg   >  1:1501727/1‑64 (MQ=255) |                                                                 CGTCCCAGGCAAATCCCATCGGTTCGATGATATGCAGACGAAAGCCGGTATTAGCGCAAAGACGG  >  W3110S.gb/3859082‑3859146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑