Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3994985	3995071	87	79 [0]	[0] 63	[yhiR]	[yhiR]

CGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTTC  >  W3110S.gb/3995072‑3995140 |                                                                     cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCTGCGAAAGCGTAACGTTtc  <  1:1066320/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:515728/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:669017/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:653983/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:649930/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:644181/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:616275/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:601316/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:585361/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:565927/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:711815/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:495172/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:477623/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:426599/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:373081/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:371274/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:343274/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:281421/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:72545/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:725692/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:82657/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:847851/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:852065/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:852299/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:906309/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:922257/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:941402/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:95164/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:966358/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:975124/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:978926/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:99382/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1360972/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1063875/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1069477/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1072377/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1099775/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1136283/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1209909/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1223333/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:122840/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1235433/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1239037/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1256964/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1295034/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1295973/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1299405/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1351495/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:286762/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1411812/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1431964/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1496404/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1530191/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1531910/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1575941/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1581744/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1594464/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1601136/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:21240/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:225371/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:239960/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:274656/69‑1 (MQ=255) cGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTtc  <  1:1061555/69‑1 (MQ=255) |                                                                     CGGGGCGCACAAAAGCGTATCAGGACAGTATACCGAAAAGAGGCCGCCGCCGCGAAAGCGTAACGTTTC  >  W3110S.gb/3995072‑3995140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑