Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4082223	4082313	91	140 [0]	[0] 87	rtcR/rtcB	sigma 54‑dependent transcriptional regulator of rtcBA expression/conserved hypothetical protein

CAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAT  >  W3110S.gb/4082314‑4082382 |                                                                     cAAACAACGAAAAGAGAAAAACAAAATgaattacgaattac                              >  1:554659/1‑41 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATgaattacgaattac                              >  1:447978/1‑41 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATgaattacgaattac                              >  1:125716/1‑41 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCAc                       >  1:1195791/1‑48 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTg                     >  1:1344389/1‑50 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGaaaa                 >  1:1324013/1‑54 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATg               >  1:1167165/1‑56 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGcccc           >  1:1480248/1‑60 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTaaaaa   >  1:1569483/1‑68 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:383646/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:521995/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:452274/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:437198/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:385739/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:384404/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:383723/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:3/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:376418/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:351525/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:351120/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:345027/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:325124/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:31242/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:311018/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:304590/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1030573/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:678025/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:97207/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:912264/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:855159/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:851506/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:783461/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:782674/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:759898/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:752089/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:749165/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:729654/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:527519/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:671973/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:668326/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:643447/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:639678/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:607046/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:601290/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:579908/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:556519/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:551532/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1244164/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1286882/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1283700/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1283230/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1279867/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1273845/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1266411/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1258093/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1257176/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1256056/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1303/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1236415/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:118063/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1169896/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:111913/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:109836/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1084132/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1083720/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1076908/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1015424/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1555496/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:291800/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:279613/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:253047/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:232697/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1604430/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1601830/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:156642/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1558348/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:299067/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1536384/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1532616/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1523066/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1442/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1427367/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1383059/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1380547/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1343074/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAt  >  1:1315508/1‑69 (MQ=255) cAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACAACTGAAAATGCCCCGGTaaa     >  1:24422/1‑66 (MQ=255) |                                                                     CAAACAACGAAAAGAGAAAAACAAAATGAATTACGAATTACTGACCACTGAAAATGCCCCGGTAAAAAT  >  W3110S.gb/4082314‑4082382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑