Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 1,385,783 C→T intergenic (‑108/‑48) ycjW ← / → ycjX predicted DNA‑binding transcriptional regulator/conserved hypothetical protein with nucleoside triphosphate hydrolase domain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,385,7830CT100.0% 1451.8 / NA 386intergenic (‑108/‑48)ycjW/ycjXpredicted DNA‑binding transcriptional regulator/conserved hypothetical protein with nucleoside triphosphate hydrolase domain
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (386/0);  total (386/0)

Only 100 of 386 total aligned reads displayed.

CCACATTCATATCCTTACGAATGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGA  >  W3110S.gb/1385771‑1385839
            |                                                         
ccACATTCATATTCTTACGATCGA‑TTTTTTTTCTGGTCTTCa                             >  1:790862/1‑42 (MQ=255)
ccACATTCATATTCTTACGAACGATTTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCg   >  1:1511365/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCt                                >  1:918233/1‑39 (MQ=38)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGCGCAGCACAGGACAGCAATGAAGCGa  >  1:661213/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGTAc               >  1:1093913/1‑56 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATg        >  1:411906/1‑63 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGaa      >  1:1170238/1‑65 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCg   >  1:436623/1‑68 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCg   >  1:1395515/1‑68 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:605192/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:598825/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:585032/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:472985/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:561172/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:537250/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:517049/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:611230/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:50968/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:493492/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:484639/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:326698/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:453863/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:419402/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:403847/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:383469/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:370939/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:362685/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:349424/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:282047/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:823407/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:987498/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:97361/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:96650/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:95930/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:947575/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:923303/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:899187/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:888238/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:857387/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:841717/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:831391/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:627853/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:80973/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:795831/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:763654/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:747771/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:731015/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:718389/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:706909/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:694916/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:671115/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:640397/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1221941/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1343299/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1326605/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:131692/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1309762/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1306757/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1280170/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1273979/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1268909/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1250247/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1233168/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1227796/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1360466/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1190717/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1175834/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1152555/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1136221/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1121416/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1105343/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:107777/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1068247/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1046271/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1035802/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1018482/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1543329/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:298106/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:100269/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:251059/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:213959/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:198620/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:188728/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:171939/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1601971/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1581812/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1562986/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:311596/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1526682/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:148907/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1482011/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1473598/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1467951/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1437097/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1422600/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1410041/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:137583/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:1366796/1‑69 (MQ=255)
ccACATTCATATTCTTACGAACGA‑TTTTTTATCTTGTCTTCAGagcag                       >  1:1531967/1‑48 (MQ=255)
ccACATACATATTCTTACGAACGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa  >  1:205295/1‑69 (MQ=255)
            |                                                         
CCACATTCATATCCTTACGAATGA‑TTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGA  >  W3110S.gb/1385771‑1385839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑