| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 2,163,626 | G→A | R9H (CGT→CAT) | mdtD → | multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,163,626 | 0 | G | A | 99.3% | 500.2 / ‑4.6 | 136 | R9H (CGT→CAT) | mdtD | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (0/135); total (0/136) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 136 total aligned reads displayed.
TCTTCCCGACAGCACCCGTTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGACAC > W3110S.gb/2163609‑2163677 | tCTTCCCGACAGCACCCGTTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:882431/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTTGacac < 1:896130/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:425680/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:598755/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:58213/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:574503/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:56757/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:56302/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:533772/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:53151/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:501529/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:473295/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:452827/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:450745/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:439139/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:641399/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:423859/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:395422/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:388327/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:36429/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:343802/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:33023/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:10102/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:304943/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:301942/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:762107/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:989474/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:868132/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:865612/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:864833/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:854083/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:845189/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:844125/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:808123/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:801926/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:777890/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:630986/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:757111/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:740923/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:736393/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:72273/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:672786/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:665463/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:660678/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:655110/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:64927/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:318005/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1179237/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1417962/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:140988/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1396524/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1355282/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1328992/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1263971/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1257227/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:123049/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1207490/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1205260/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1196884/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:274090/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1176543/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1158001/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1157083/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1148865/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1139880/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:113899/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1130278/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1086781/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1077229/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1026541/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1020016/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1606538/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:275480/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:273923/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:212879/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:211596/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:204368/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:189928/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:181373/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:174733/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:171390/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1606784/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1470848/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1531069/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1476792/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1489858/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1523189/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1564011/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:153844/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1554051/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1556265/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATCCAGTCGCTGGacac < 1:537747/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCCTCTTTATGCAGTCGCTGGacac < 1:740007/69‑1 (MQ=255)tCTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCGTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:956411/69‑1 (MQ=255) cTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1093584/68‑1 (MQ=255) cTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:24797/68‑1 (MQ=255) cTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:924946/68‑1 (MQ=255) cTTCCCGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:1583090/68‑1 (MQ=255) cccGACAGCACCCATTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:640389/65‑1 (MQ=255) aCCCATTGGCAATTGTGTATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGacac < 1:4940/56‑1 (MQ=255) | TCTTCCCGACAGCACCCGTTGGCAATTGTGGATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGACAC > W3110S.gb/2163609‑2163677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |