| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 3,783,965 | C→T | G13D (GGC→GAC) | yidI ← | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,783,965 | 0 | C | T | 99.2% | 416.7 / ‑5.7 | 119 | G13D (GGC→GAC) | yidI | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (0/118); total (0/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 119 total aligned reads displayed.
GATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGCCCAATGAACTGATTTTATTTTGAGCTAT > W3110S.gb/3783925‑3783993 | gATAATCCCCATCATTGAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:42716/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:410819/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:551544/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:540573/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:533337/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:511076/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:487435/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:477462/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:46257/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:444524/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:440522/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:428236/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:561175/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:406900/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:384254/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:379442/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:366203/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:337863/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:304213/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:291982/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:271927/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:243432/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1007710/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:224311/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:717324/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:965261/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:961633/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:940679/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:918616/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:891489/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:867456/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:858463/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:854309/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:792315/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:781295/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:750944/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:22892/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:707895/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:682970/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:666805/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:657718/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:642592/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:640127/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:635677/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:625541/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:622944/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:601187/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:569722/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1184517/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:136725/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1361969/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1359123/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1321839/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1309059/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1271531/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1242196/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1239322/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1229050/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1209402/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:11861/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:183215/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1134607/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1115454/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1106621/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1098927/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1095170/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1068107/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1055291/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1047672/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:104062/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1022230/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1483873/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:22288/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:17042/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:168059/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:167321/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1595903/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1553706/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:15513/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1488446/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1487742/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1485135/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1380901/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1475027/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1472727/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1465878/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1441409/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:142889/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1406336/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1404552/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:140109/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1399852/69‑1 (MQ=255)gATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGCCCAATGAACTGATTTTATTTTGAGCTAt < 1:81519/69‑1 (MQ=255) aTAATCCCCATCATTAATGCGATGGCACCGAACAGCTTGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:310097/68‑1 (MQ=255) aTAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:719670/68‑1 (MQ=255) aTAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:598606/68‑1 (MQ=255) aTAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1359414/68‑1 (MQ=255) aaTCCCCATCATTAAAGCGATGGCACCGTACAGCATGTCCAATGAACTGATTTTATTTTCAGCTAt < 1:1218621/66‑1 (MQ=255) ggCACCGAACAGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1078424/45‑1 (MQ=255) aGCATGTCCAATGAACTGATTTTATTTTGAGCTAt < 1:1393432/35‑1 (MQ=255) | GATAATCCCCATCATTAAAGCGATGGCACCGAACAGCATGCCCAATGAACTGATTTTATTTTGAGCTAT > W3110S.gb/3783925‑3783993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |