New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 779866	56 (1.220)	13 (0.370) +TGCTTCTGGGG	5/74	NT	22.8%	coding (378/522 nt)	pal	peptidoglycan‑associated outer membrane lipoprotein
	?	W3110S.gb	= 4285736	58 (1.260)					coding (932/1293 nt)	yjcF	conserved hypothetical protein

TGGGTGAACGTCGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/779850‑779866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTACGCGGTTAACAAAT  <  W3110S.gb/4285736‑4285720                  |||||||||||                  gtGGTGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAAA   <  1:489969/42‑1  tGGTGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACA     <  1:2728319/40‑1  tGGTGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACA     <  1:3512563/40‑1   GGTGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAAAc  >  1:2319108/1‑42    GTGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACA     <  1:3428414/39‑1     TGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAAA   >  1:2942507/1‑40     TGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAA    <  1:3022804/39‑1     TGAACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACA     <  1:2630931/38‑1       AACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAAA   <  1:3794169/38‑1       AACGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAAA   <  1:3924619/38‑1         CGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAAAc  >  1:1445768/1‑36         CGTCGTGCGTGCTTCTGGGGTTACGCGGTTAACAA    <  1:1548812/35‑1         CGTCGTGCGTGCTTCAGGGGTTACGCGGTTAACAAA   >  1:1353993/1‑36                  |||||||||||                  TGGGTGAACGTCGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/779850‑779866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTACGCGGTTAACAAAT  <  W3110S.gb/4285736‑4285720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.