Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 1,301,041 Δ1,336 bp 100% insCinsD insC, insD

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 1301041–1302370 1302376 7–1336 53 [0] [0] 52 insC–insD insC,insD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 13010400 (0.000)31 (0.790) 25/82 NT 100% intergenic (+218/‑90) ychE/insC predicted inner membrane protein/IS2 element protein
?W3110S.gb 1302377 = 0 (0.000)intergenic (+19/‑519) insD/oppA IS2 element protein/oligopeptide transporter subunit

CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1300970‑1301040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCA  >  W3110S.gb/1302377‑1302445
                                                                                                                                            
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA                                                                       >  1:12844/1‑71
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATAT                                                                         <  1:3789147/69‑1
  CCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATAT                                                                         <  1:3150471/67‑1
   CTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTA                                                                    <  1:571197/71‑1
   CTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA                                                                       <  1:2433678/68‑1
     CACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAAT                                                                  >  1:2904787/1‑71
      ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATT                                                                 >  1:3141221/1‑71
      ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATT                                                                 >  1:1438082/1‑71
         ATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                              >  1:2776927/1‑71
         ATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                              >  1:441487/1‑71
           CATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACT                                                            >  1:1770685/1‑71
               TTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA                                                                   >  1:3633367/1‑60
               TTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA                                                                   >  1:1526961/1‑60
                 ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                              >  1:1154883/1‑63
                  TTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                              >  1:3588079/1‑62
                    TTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGG                                                    >  1:2127228/1‑70
                         CACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGG                                                    >  1:3640814/1‑65
                         CACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGG                                                    >  1:1622730/1‑65
                          ACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGG                                              >  1:1528074/1‑70
                           CATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAA                                            <  1:3935157/71‑1
                           CATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                      <  1:673018/61‑1
                            ATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATAT                                                                         <  1:3892910/41‑1
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATA                                                                          >  1:1236334/1‑39
                               ATAATCCTGGGCTTGCTGAAGGATAATTGAAATGATATTATTAATTCCA                                                              >  1:4586530/1‑49
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGA                                                >  1:3518327/1‑63
                                TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                     <  1:3874519/41‑1
                                TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                     <  1:1203801/41‑1
                                 AATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCC                                                               <  1:581409/46‑1
                                  ATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGC                                       >  1:2040608/1‑69
                                   TCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                     <  1:3052131/38‑1
                                    CCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCT                                      >  1:1641706/1‑68
                                     CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA                                   >  1:2346189/1‑70
                                      TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA                                   <  1:1685825/69‑1
                                      TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCC                                                               <  1:530686/41‑1
                                        GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTA                                     <  1:1115396/65‑1
                                         GCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAA                                <  1:1609370/69‑1
                                             GCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATC                           >  1:733116/1‑70
                                              CTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAA                         >  1:3216604/1‑71
                                                 AAGAATAATTGAAATGATATTATTAATTCCACTGC                                                          >  1:3377835/1‑35
                                                   GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGT                     >  1:91538/1‑70
                                                     ATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAA                  <  1:4022965/71‑1
                                                      TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA                                                  <  1:594126/38‑1
                                                      TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA                                                  <  1:4645248/38‑1
                                                        ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATA                              <  1:3754143/56‑1
                                                           GAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATT            >  1:1156586/1‑71
                                                           GAAATGATATTATTAATTCCACTGCCATTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTAT             <  1:2242672/70‑1
                                                              ATGATATTATTAATTCCACTCCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTG         <  1:2961913/71‑1
                                                               TGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGC        <  1:4440853/71‑1
                                                                  TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT     <  1:2443720/71‑1
                                                                  TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA                                   <  1:2992221/41‑1
                                                                   ATTATTGATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATT            >  1:6084/1‑63
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT    <  1:2390830/70‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT    <  1:1155323/70‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT    <  1:3373113/70‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAAT                <  1:2999236/58‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                    <  1:1320264/38‑1
                                                                      ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCA  <  1:4075359/70‑1
                                                                                                                                            
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1300970‑1301040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCA  >  W3110S.gb/1302377‑1302445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.