| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2176983–2178180 | 2178181 | 2–1199 | 81 [0] | [0] 79 | [gatA]–[gatA] | [gatA],insH,[gatA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2176982 | 0 (0.000) | 65 (1.580) | 38/86 | NT | 100% | coding (71/321 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb | 2178182 = | 0 (0.000) | coding (202/315 nt) | gatA | galactitol‑specific enzyme IIA component of PTS | |||||
GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176909‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC > W3110S.gb/2178182‑2178248 GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:1134881/1‑71 TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT > 1:1834173/1‑70 GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:1319883/1‑71 TTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGTCTGACGACTTAG < 1:1343175/70‑1 ATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT > 1:56975/1‑71 TCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC < 1:559608/68‑1 ATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAA > 1:686789/1‑71 ATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT > 1:233700/1‑68 ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG > 1:233041/1‑71 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC > 1:3457560/1‑71 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATG < 1:2938298/65‑1 CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCC < 1:711672/70‑1 CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCA > 1:3218783/1‑61 CTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCA < 1:2048689/71‑1 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGAGGACTTAGCATGAATCGCCTCAC < 1:2935864/69‑1 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:3725391/69‑1 CTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAAT < 1:1777183/71‑1 CTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTA < 1:3350136/52‑1 GAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC > 1:3705663/1‑71 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC > 1:800114/1‑70 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:4213078/1‑67 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC < 1:919884/60‑1 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC < 1:1917135/60‑1 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC < 1:1418035/60‑1 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT > 1:1794122/1‑48 AAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG > 1:3220941/1‑71 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:708770/1‑71 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC < 1:1098230/55‑1 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGA < 1:1629044/52‑1 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT > 1:4160992/1‑71 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:3903485/71‑1 CTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA < 1:506103/71‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT < 1:4248197/70‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT > 1:4237175/1‑46 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG > 1:1362568/1‑57 TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:1157843/70‑1 TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:4576666/70‑1 TTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCG > 1:755961/1‑71 TGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAACGCCTCACAATGCGGTATTGCAATAGCG < 1:1588140/70‑1 TGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:1945998/47‑1 CCTTAACAGATAAATGGCTGACTACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCT < 1:1367502/71‑1 CCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGC > 1:1055301/1‑70 TTAACAGATAAATGGCTGACGACTTAGCATTAATCGCCTCAC < 1:4104377/42‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:4547329/42‑1 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:404141/1‑71 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:2042282/1‑71 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCA < 1:54369/69‑1 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:1436206/1‑49 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:4313253/1‑70 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG < 1:2275527/70‑1 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA < 1:1538370/53‑1 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:2231545/1‑41 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:2236070/1‑41 CAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCA < 1:4057833/71‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT < 1:2616434/70‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCA < 1:2459007/69‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTCCAATAGCGTGCTGCTCAAGCAT > 1:1671791/1‑70 ATAAATGGCTGAGGACTTAGCATGAATCGCCTCACAATGCGG < 1:1348109/42‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA < 1:2039505/49‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA < 1:4349193/49‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:3196400/48‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:4052616/48‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:3638145/48‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:4641832/48‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:327268/48‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:3802282/35‑1 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:1057137/1‑43 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG < 1:2581181/41‑1 AAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATC > 1:2262851/1‑71 AAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:4113355/1‑48 AATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG < 1:3485391/39‑1 TGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT < 1:919790/40‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT < 1:1707455/39‑1 CTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:1282404/69‑1 CTGACGACTTAGCATGAATCGCCTCACAATGCGGTATCGC < 1:1990610/40‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT > 1:1071694/1‑60 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT < 1:4312312/47‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG < 1:2110331/66‑1 GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAA > 1:3442424/1‑71 GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAA < 1:3224510/71‑1 GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA > 1:3883998/1‑39 TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC > 1:3296542/1‑71 TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGC < 1:1441957/51‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGGTGCTCAAGCATTA > 1:1751203/1‑53 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC < 1:1546101/69‑1 GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176909‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC > W3110S.gb/2178182‑2178248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |