Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 2,176,983 Δ1,199 bp 100% [gatA][gatA] [gatA], insH, [gatA]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 2176983–2178180 2178181 2–1199 81 [0] [0] 79 [gatA]–[gatA] [gatA],insH,[gatA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 21769820 (0.000)65 (1.580) 38/86 NT 100% coding (71/321 nt) gatA galactitol‑specific enzyme IIA component of PTS
?W3110S.gb 2178182 = 0 (0.000)coding (202/315 nt) gatA galactitol‑specific enzyme IIA component of PTS

GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2176909‑2176982
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC  >  W3110S.gb/2178182‑2178248
                                                                                                                                             
GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT                                                                        >  1:1134881/1‑71
 TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT                                                                        >  1:1834173/1‑70
   GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG                                                                     >  1:1319883/1‑71
    TTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGTCTGACGACTTAG                                                                     <  1:1343175/70‑1
      ATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT                                                                  >  1:56975/1‑71
       TCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC                                                                    <  1:559608/68‑1
         ATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAA                                                               >  1:686789/1‑71
         ATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT                                                                  >  1:233700/1‑68
            ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG                                                            >  1:233041/1‑71
             TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC                                                           >  1:3457560/1‑71
             TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATG                                                                 <  1:2938298/65‑1
               CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCC                                                          <  1:711672/70‑1
               CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCA                                                                   >  1:3218783/1‑61
                 CTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCA                                                       <  1:2048689/71‑1
                    GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGAGGACTTAGCATGAATCGCCTCAC                                                      <  1:2935864/69‑1
                    GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC                                                      <  1:3725391/69‑1
                     CTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAAT                                                   <  1:1777183/71‑1
                     CTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTA                                                                      <  1:3350136/52‑1
                       GAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC                                                 >  1:3705663/1‑71
                        AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC                                                 >  1:800114/1‑70
                        AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA                                                    >  1:4213078/1‑67
                        AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC                                                           <  1:919884/60‑1
                        AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC                                                           <  1:1917135/60‑1
                        AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGC                                                           <  1:1418035/60‑1
                        AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT                                                                       >  1:1794122/1‑48
                         AAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG                                               >  1:3220941/1‑71
                           ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA                                             >  1:708770/1‑71
                           ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC                                                             <  1:1098230/55‑1
                           ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGA                                                                <  1:1629044/52‑1
                            TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT                                            >  1:4160992/1‑71
                               ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC                                         <  1:3903485/71‑1
                                CTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA                                        <  1:506103/71‑1
                                   TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT                                      <  1:4248197/70‑1
                                   TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT                                                              >  1:4237175/1‑46
                                    ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG                                                  >  1:1362568/1‑57
                                     TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG                                    <  1:1157843/70‑1
                                     TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG                                    <  1:4576666/70‑1
                                      TTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCG                                  >  1:755961/1‑71
                                       TGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAACGCCTCACAATGCGGTATTGCAATAGCG                                  <  1:1588140/70‑1
                                          TGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC                                                      <  1:1945998/47‑1
                                             CCTTAACAGATAAATGGCTGACTACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCT                           <  1:1367502/71‑1
                                             CCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGC                            >  1:1055301/1‑70
                                               TTAACAGATAAATGGCTGACGACTTAGCATTAATCGCCTCAC                                                      <  1:4104377/42‑1
                                               TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC                                                      <  1:4547329/42‑1
                                                 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG                       >  1:404141/1‑71
                                                 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG                       >  1:2042282/1‑71
                                                 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCA                         <  1:54369/69‑1
                                                 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA                                             >  1:1436206/1‑49
                                                  ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG                       >  1:4313253/1‑70
                                                  ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG                       <  1:2275527/70‑1
                                                  ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA                                        <  1:1538370/53‑1
                                                  ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA                                                    >  1:2231545/1‑41
                                                  ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA                                                    >  1:2236070/1‑41
                                                   CAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCA                     <  1:4057833/71‑1
                                                     GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT                    <  1:2616434/70‑1
                                                     GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCA                     <  1:2459007/69‑1
                                                     GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTCCAATAGCGTGCTGCTCAAGCAT                    >  1:1671791/1‑70
                                                      ATAAATGGCTGAGGACTTAGCATGAATCGCCTCACAATGCGG                                               <  1:1348109/42‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA                                        <  1:2039505/49‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA                                        <  1:4349193/49‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC                                         <  1:3196400/48‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC                                         <  1:4052616/48‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC                                         <  1:3638145/48‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC                                         <  1:4641832/48‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC                                         <  1:327268/48‑1
                                                      ATAAATGGCTGACGACTTAGCATGAATCGCCTCAC                                                      <  1:3802282/35‑1
                                                       TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA                                             >  1:1057137/1‑43
                                                       TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG                                               <  1:2581181/41‑1
                                                        AAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATC                >  1:2262851/1‑71
                                                        AAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA                                       >  1:4113355/1‑48
                                                         AATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG                                               <  1:3485391/39‑1
                                                           TGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT                                            <  1:919790/40‑1
                                                            GGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT                                            <  1:1707455/39‑1
                                                              CTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG            <  1:1282404/69‑1
                                                              CTGACGACTTAGCATGAATCGCCTCACAATGCGGTATCGC                                         <  1:1990610/40‑1
                                                               TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT                    >  1:1071694/1‑60
                                                               TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT                                 <  1:4312312/47‑1
                                                                 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG            <  1:2110331/66‑1
                                                                   GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAA     >  1:3442424/1‑71
                                                                   GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAA     <  1:3224510/71‑1
                                                                   GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA                                     >  1:3883998/1‑39
                                                                      TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC  >  1:3296542/1‑71
                                                                      TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGC                      <  1:1441957/51‑1
                                                                        AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGGTGCTCAAGCATTA                  >  1:1751203/1‑53
                                                                        AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC  <  1:1546101/69‑1
                                                                                                                                             
GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2176909‑2176982
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTC  >  W3110S.gb/2178182‑2178248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.