New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2672755	27 (0.590)	8 (0.210) +AATAGGGA	6/80	NT	26.2%	coding (590/873 nt)	yphB	conserved hypothetical protein
	?	W3110S.gb	4216206 =	NA (NA)					noncoding (2572/2904 nt)	rrlE	23S ribosomal RNA

CCATTGTTCACCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2672740‑2672755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCGAGCTGGGTTTAGAACGTCGTGAGA  >  W3110S.gb/4216206‑4216234                 ||||||||                              ggATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGA  >  1:2608209/3‑53  gATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCG          <  1:2560307/43‑1   ATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGT      <  1:505199/47‑1   ATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCG          <  1:1801894/43‑1   ATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTA               <  1:1449042/38‑1     TGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGA             <  1:1148412/38‑1      GTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGT      >  1:282090/1‑44        TCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGT         >  1:4330129/1‑39                 ||||||||                              CCATTGTTCACCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2672740‑2672755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCGAGCTGGGTTTAGAACGTCGTGAGA  >  W3110S.gb/4216206‑4216234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.