New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3285126	67 (1.460)	7 (0.180) +CGGTTGTG	4/80	NT	14.1%	coding (587/804 nt)	agaC	N‑acetylgalactosamine‑specific enzyme IIC component of PTS
	?	W3110S.gb	3380815 =	35 (0.760)					coding (218/1368 nt)	degQ	serine endoprotease, periplasmic

TGCCGTTGGTTTTGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3285109‑3285126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAGTTTTTTGGTGATGATTT  >  W3110S.gb/3380815‑3380836                   ||||||||                       atCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT          <  1:1854272/38‑1   CCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGTa         >  1:3248023/1‑38   CCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG           >  1:1992951/1‑37   CCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG           <  1:3718929/37‑1    CGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT‑ATGAT    >  1:3673668/1‑42        GGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT‑ATGATat  >  1:3484221/1‑38        GGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT‑ATGAT    <  1:4034365/38‑1                   ||||||||                       TGCCGTTGGTTTTGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3285109‑3285126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAGTTTTTTGGTGATGATTT  >  W3110S.gb/3380815‑3380836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.