| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3742938–3744265 | 3744273 | 9–1336 | 62 [0] | [0] 64 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3742937 | 0 (0.000) | 56 (1.460) | 36/80 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb | 3744274 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCA > W3110S.gb/3744274‑3744339 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAATCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1905798/71‑1ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTG > 1:1245235/1‑70 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:3946149/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:2945509/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:581969/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:1339266/71‑1 GGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:1759276/1‑71 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:3243506/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:2251427/67‑1 ACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:1580006/64‑1 CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:2023799/71‑1 CGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT > 1:645448/1‑71 CTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:718087/54‑1 TAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:3863467/52‑1 AAAAGTTTGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:1321507/1‑53 AAAAGTTCGATTCAGTCAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:3055375/1‑71 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:3501327/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA < 1:3056725/69‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA < 1:4496624/69‑1 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA > 1:2396070/1‑52 AAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:3398123/64‑1 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:3333233/1‑64 TCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCG > 1:1305314/1‑71 TCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG > 1:1341018/1‑55 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG > 1:3212179/1‑71 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1035859/43‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:496451/70‑1 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:376559/1‑71 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:2945051/1‑71 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:499727/1‑71 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:1879922/1‑56 CAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT > 1:1426467/1‑42 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGC < 1:2709887/71‑1 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG < 1:894000/68‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:2398681/71‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:1616227/71‑1 AGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGGTTCATACGATTCGGTTATGCCAT < 1:4469283/69‑1 GCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:3978303/1‑71 GCTTATTACAACTTTTTTACATTTTATTGTGAAATTAGGTCGCGTTTCATACGATTCGGTTATG > 1:820516/1‑64 GCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:4235753/35‑1 CTTATTACAACTTTTTGACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:4175885/1‑70 TATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGC > 1:1876518/1‑71 TTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:3498524/1‑43 TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA > 1:3518387/1‑43 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC > 1:3918863/1‑50 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:4390429/1‑69 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTA > 1:1097637/1‑69 AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAG < 1:3923470/71‑1 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGG < 1:4439686/71‑1 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:998570/1‑44 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT < 1:2654944/37‑1 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT > 1:2138571/1‑71 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGT < 1:2617120/71‑1 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATT > 1:3939840/1‑45 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATT > 1:2821941/1‑45 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:3125689/1‑37 TTTTTTACATTTTATTGTGAAATTGGGTCGCTTTTCATACGATTC < 1:206893/45‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:4398305/1‑59 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT < 1:43747/48‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC < 1:838091/45‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC < 1:2017330/45‑1 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTT > 1:1605592/1‑71 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:930468/1‑48 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT < 1:2752409/70‑1 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA < 1:1536116/70‑1 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATG < 1:293075/71‑1 ATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGG > 1:2359340/1‑71 TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGT < 1:4363090/71‑1 TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCC < 1:703690/45‑1 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT > 1:3313885/1‑71 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGAC > 1:3754031/1‑50 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:518394/1‑49 TTTATTGTGAAATTGGGTCGCGTTTCATACGATTAGGTTATGCCATCG > 1:2902386/1‑48 TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT < 1:3170093/70‑1 TTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCC < 1:1758197/71‑1 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC < 1:2616707/71‑1 TTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCA < 1:1382922/70‑1 TTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA < 1:216988/45‑1 TGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC > 1:4575275/1‑61 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3742861‑3742937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCA > W3110S.gb/3744274‑3744339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |