| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 29 (0.630) | 214 (10.650) +TTTAATATCAGTAAACCGGACATAACC |
47/42 | NT | 94.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 30 (0.650) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 628 total aligned reads displayed.
AGATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236728‑236868 | agaTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa < 1:425841/71‑1 (MQ=255) gATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAt > 1:2949574‑M1/1‑70 (MQ=255) aTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtt < 1:2367721‑M1/71‑3 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:1222147‑M1/71‑4 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:538492‑M1/71‑4 (MQ=255) tGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt > 1:1244949‑M1/1‑67 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:4643598‑M1/1‑66 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:20383‑M1/1‑66 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaat < 1:3568174‑M1/71‑7 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa < 1:2864393‑M1/70‑6 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa < 1:3449430‑M1/70‑6 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATAcc < 1:4570149/70‑1 (MQ=255) cTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat < 1:3032832‑M1/70‑9 (MQ=255) tCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAt > 1:2643223‑M1/1‑61 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:4189403‑M1/1‑60 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:3945222‑M1/1‑60 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:1744770‑M1/1‑60 (MQ=255) tGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:4382546‑M1/71‑14 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatga > 1:477062‑M1/1‑57 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa > 1:4006249‑M1/1‑56 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaa > 1:2227156‑M1/1‑56 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac < 1:3414787‑M1/69‑17 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:1912602‑M1/65‑14 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCTAGCATAAtttaatatcagtaaacctg < 1:1170972‑M1/68‑20 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggaca > 1:1088425‑M1/1‑49 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggaca > 1:2576237‑M1/1‑49 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggaca < 1:3437567‑M1/71‑23 (MQ=255) ctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:1637579‑M1/1‑48 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:2070364‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:2914301‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagt > 1:1054015‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:3302779/68‑1 (MQ=255) cGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:2260327/1‑69 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataac > 1:3547734‑M1/1‑45 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat < 1:682388‑M1/68‑24 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat < 1:3393705‑M1/68‑24 (MQ=255) cTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataaccca > 1:148138‑M1/1‑42 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa > 1:924378‑M1/1‑41 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa < 1:1118348‑M1/46‑6 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:3737655‑M1/44‑4 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtt < 1:1694249‑M1/43‑3 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa > 1:3118022/1‑39 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatg > 1:3858477‑M1/1‑39 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataac < 1:1471054‑M1/65‑27 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatg > 1:3824626‑M1/1‑38 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccat < 1:1150148‑M1/68‑31 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat < 1:2786013‑M1/61‑24 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttta < 1:4546023‑M1/42‑5 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:3630211‑M1/71‑38 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:4511155‑M1/71‑38 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:2754678‑M1/71‑38 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:1612346‑M1/1‑34 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa < 1:567774‑M1/71‑39 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa < 1:72180‑M1/71‑39 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg < 1:3265469‑M1/51‑19 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:234578/1‑54 (MQ=255) aaaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:316945‑M1/1‑30 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcg > 1:2726179‑M1/1‑29 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatc > 1:1980059‑M1/1‑29 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAttt < 1:2142208/70‑1 (MQ=255) aGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgc > 1:4342387‑M1/1‑28 (MQ=255) aGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac > 1:3919490‑M1/1‑28 (MQ=255) gCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca < 1:2317374‑M1/36‑11 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctt > 1:3647493‑M1/1‑24 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCg < 1:2448740/61‑1 (MQ=255) aaGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt < 1:2831308‑M1/71‑50 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttttt < 1:1537060‑M1/71‑52 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:812525‑M1/57‑38 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:1961938‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatga < 1:3596657‑M1/51‑33 (MQ=255) tGCCTCTGGCGAGCATAAtttaatatcagtaaaccggac > 1:2188369‑M1/1‑18 (MQ=255) tGCCTCTGGCGACCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg > 1:4475369/1‑51 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:4299888‑M1/70‑54 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:1772933‑M1/1‑17 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:4115297‑M1/1‑17 (MQ=255) ctctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:971871‑M1/68‑54 (MQ=255) ctctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:777039‑M1/54‑40 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcg < 1:3497604‑M1/56‑43 (MQ=255) ctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa > 1:130881‑M1/1‑13 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg > 1:3213723‑M1/1‑12 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaag > 1:3087661‑M1/1‑12 (MQ=255) tGGCGAGCATAAtttaatatcagtaaaccggacataacc < 1:1494397‑M1/39‑28 (MQ=255) tGGCGACCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgg > 1:601727‑M1/1‑12 (MQ=255) ggCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg > 1:1830012‑M1/1‑11 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggca < 1:1390507‑M1/71‑62 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggc < 1:335922‑M1/70‑61 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:249447‑M1/69‑60 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagg > 1:4100244‑M1/1‑8 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagg > 1:331810‑M1/1‑8 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataaaccatgaagaaaaatcgcgcttttttg < 1:849606‑M1/60‑53 (MQ=255) aGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:3695070‑M1/59‑53 (MQ=255) cATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttt < 1:4416951‑M1/55‑51 (MQ=255) cATAAtttaatatcagtaaaccggacataacccatgaagaaaa > 1:2400917‑M1/1‑5 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggc > 1:4063469‑M1/1‑3 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:1863712‑M1/62‑60 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttttt > 1:2989589‑M1/1‑3 (MQ=255) tAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg < 1:2525593/36‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag < 1:1002725‑M1/71‑71 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:3786388‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:1359608‑M1/53‑53 (MQ=255) | AGATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236728‑236868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |