| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1116875 = | 47 (1.020) | 34 (0.930) +CATCTGTACT |
4/76 | NT | 45.2% | coding (193/1227 nt) | mdtG | predicted drug efflux system |
| ? | W3110S.gb | 1806604 = | 57 (1.240) | pseudogene (1797/1900 nt) pseudogene (1313/1416 nt) |
arpB arpB |
ECK1718:JW5278+JW1710:b4494; hypothetical protein ECK1718:JW1710:b1721; hypothetical protein, C‑ter fragment |
|||||
ATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTC > W3110S.gb/1116811‑1116944 | aTGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAACCGGTGAGGCGATGGCCGAAAATAAAAATGt < 1:3141906/71‑1 (MQ=255) ttCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCt > 1:2459139/1‑70 (MQ=255) ttCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCt > 1:1446959/1‑70 (MQ=255) tCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTg < 1:2191502/70‑1 (MQ=255) ggCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGaa < 1:1921005/70‑1 (MQ=255) ggCCTTTACGGTCGGCGAGTCCACCCCAAAACGGGGAGGCGATGGCCGAAAATAAAAATGTAATGCTGaa < 1:4048006/70‑1 (MQ=255) gCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAg < 1:2736629/70‑1 (MQ=255) ccTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGAc < 1:2377208/71‑1 (MQ=255) ccTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGAc < 1:3104500/71‑1 (MQ=255) cTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGaa > 1:2958081/1‑67 (MQ=255) tttACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGt < 1:2665420/57‑1 (MQ=255) tACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAAt < 1:2637174/70‑1 (MQ=255) tACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATa > 1:4096559/1‑71 (MQ=255) gCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATg < 1:3554393/46‑1 (MQ=255) gAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACaa > 1:1860697/1‑59 (MQ=255) gTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACaa > 1:3076732/1‑57 (MQ=255) gTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACaa > 1:2263653/1‑57 (MQ=255) tCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACata > 1:3527326/1‑70 (MQ=255) cACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAAt > 1:2012402/1‑38 (MQ=255) cACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAAt < 1:3447975/55‑1 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:2443791‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:1480082‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:2858947‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:2607467‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:4152239‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:4531661‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:3057292‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATg > 1:4599044‑M1/31‑36 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGt > 1:2400141‑M1/31‑37 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGt > 1:4334062‑M1/31‑37 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGt > 1:2455445‑M1/31‑37 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGt > 1:683347‑M1/31‑37 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGt > 1:4169933‑M1/31‑37 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGTaa > 1:2974920‑M1/31‑39 (MQ=255) ttcatactgcttatgatgaaagtacagatgAAAATGTAATGc > 1:3298761‑M1/31‑42 (MQ=255) cccAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGAc < 1:1317384/49‑1 (MQ=255) cccAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTc > 1:836806/1‑68 (MQ=255) ccAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTaa > 1:703512/1‑38 (MQ=255) ccAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTaa > 1:3199624/1‑38 (MQ=255) ccAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACaa > 1:2214058/1‑50 (MQ=255) ccAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGAcc > 1:3456050/1‑59 (MQ=255) catactgcttatgatgaaagtacagatgAAAATGTaa > 1:4562917‑M1/29‑37 (MQ=255) catactgcttatgatgaaagtacagatgAAAATGTaa < 1:424725‑M1/9‑1 (MQ=255) catactgcttatgatgaaagtacagatgAAAATGTa < 1:2643648‑M1/8‑1 (MQ=255) cAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTaa < 1:3853369/37‑1 (MQ=255) cAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACa > 1:3676081/1‑48 (MQ=255) cAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATa > 1:277172/1‑51 (MQ=255) cAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATa > 1:2676199/1‑51 (MQ=255) cAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACatat < 1:396939/64‑1 (MQ=255) atactgcttatgatgaaagtacagatgAAAATGTa < 1:2732529‑M1/8‑1 (MQ=255) atactgcttatgatgaaagtacagatgAAAATGTa < 1:1190993‑M1/8‑1 (MQ=255) atactgcttatgatgaaagtacagatgAAAATGTAATGcta < 1:2542498‑M1/14‑2 (MQ=255) atactgcttatgatgaaagtacagatgAAAATGTAATGcta < 1:3825520‑M1/14‑2 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATg < 1:1088496‑M1/11‑1 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATg < 1:2682740‑M1/11‑1 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATGc > 1:4359877‑M1/27‑38 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATGc > 1:290840‑M1/27‑38 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATGc > 1:747308‑M1/27‑38 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATGc > 1:1185985‑M1/27‑38 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATGCt > 1:235506‑M1/27‑39 (MQ=255) tactgcttatgatgaaagtacagatgAAAATGTAATGCt > 1:696809‑M1/27‑39 (MQ=255) ctgcttatgatgaaagtacagatgAAAATGTAATGCt > 1:2033412‑M1/25‑37 (MQ=255) tgcttatgatgaaagtacagatgAAAATGTAATGc > 1:4639116‑M1/24‑35 (MQ=255) tgcttatgatgaaagtacagatgAAAATGTAATGCt < 1:3724710‑M1/13‑1 (MQ=255) tgcttatgatgaaagtacagatgAAAATGTAATGCt > 1:2534926‑M1/24‑36 (MQ=255) cGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGt > 1:3054551/1‑71 (MQ=255) cGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGt < 1:2931089/71‑1 (MQ=255) aGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCg > 1:917390/1‑71 (MQ=255) aGGCGATGGCCGAAAATAAAAATGTAATCCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCg < 1:1737488/71‑1 (MQ=255) ggCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCgg > 1:3992846/1‑71 (MQ=255) ggCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCgg < 1:1194380/71‑1 (MQ=255) gCGATGGCCGAAAATAAAAATGTAATGCTGAAGACaa > 1:3103001/1‑37 (MQ=255) gCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCg > 1:1081138/1‑42 (MQ=255) gCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCgg < 1:2413970/61‑1 (MQ=255) gCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCgg < 1:185767/61‑1 (MQ=255) cGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTa < 1:1617463/71‑1 (MQ=255) cGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTa < 1:1612282/71‑1 (MQ=255) gATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTaa < 1:2975506/71‑1 (MQ=255) aTGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCgg > 1:2981375/1‑58 (MQ=255) gCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGa > 1:389779/1‑38 (MQ=255) gCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATAtt < 1:849829/47‑1 (MQ=255) aaaaTAAAAATGTAATGCTGAAGACAATACCGGACcaca < 1:2380628/39‑1 (MQ=255) aaaTAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAgct < 1:1996986/71‑1 (MQ=255) aaTAAAAATGTAATGCTGAAGACAATACCGGACCACata > 1:3210293/1‑39 (MQ=255) aaTAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAg > 1:4038945/1‑51 (MQ=255) aTAAAAATGTAATGCTGAAGACAATACCGGACCACATAtt < 1:2358578/40‑1 (MQ=255) aaaaTGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTaa > 1:816096/1‑57 (MQ=255) aaaaTGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTc > 1:1048336/1‑70 (MQ=255) | ATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGACCGGTAACGCCAAGCTGCTC > W3110S.gb/1116811‑1116944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |