| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 50 (1.140) | 29/92 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
ATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT > W3110S.gb/2172241‑2172374 | atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:2359669/1‑71 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc < 1:2456695/69‑1 (MQ=255) ttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCtt < 1:3994797/70‑1 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:2296588/71‑1 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:771315/1‑71 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:2325148/1‑71 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:2176222/1‑71 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:72220/70‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:2420403/1‑70 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCtt < 1:2773581/60‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:3827610/1‑71 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:2964067/1‑71 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg < 1:1382602/69‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATATTg < 1:3763699/71‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt < 1:642771/70‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:1847196/71‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:3968422/71‑1 (MQ=255) tCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGAAATAGTg > 1:2594127/1‑70 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:3385004/69‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac > 1:942943/1‑71 (MQ=255) gtcGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc < 1:2570993/69‑1 (MQ=255) ggCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAtgc < 1:2299637/71‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:4382143/1‑43 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:1410540/1‑58 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt < 1:3998953/43‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:4467156/53‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:144828/55‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:3274623/55‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:3612617/56‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:3791792/60‑1 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:1630664/71‑1 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:4059349/1‑41 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:283741/57‑1 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:2850088/57‑1 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa > 1:3306281/1‑59 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:2078493/1‑71 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:1871829/1‑71 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:4044957/71‑1 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:855631/50‑1 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:609508/1‑53 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:1358807/1‑53 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:547925/1‑70 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:3944082/43‑1 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:3416528/70‑1 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:4586546/70‑1 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2157362/70‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:539587/41‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:3877534/41‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:1820638/41‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:1388455/60‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:214225/70‑1 (MQ=255) aCTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAActc > 1:2125416/1‑71 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:4338953/1‑39 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:4397516/70‑1 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGATTAAACTCtcagt < 1:870789/71‑1 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:2252985/71‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:944170/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:89804/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:3814770/70‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:1459602/68‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:1727609/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:1075091/44‑1 (MQ=255) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:3822563/1‑70 (MQ=40) tAACGGTCTGATCTTACCCAGAAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:2485847/1‑70 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:363919/1‑71 (MQ=38) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:3907703/70‑1 (MQ=37) aCGGTCTGATCTTAACCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:153829/1‑70 (MQ=255) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:2149003/1‑71 (MQ=34) ggTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:1807266/1‑71 (MQ=32) ggTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:2236373/71‑1 (MQ=32) | ATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT > W3110S.gb/2172241‑2172374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |