| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 9 (0.200) | 18 (0.480) | 15/78 | NT | 79.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 2 (0.050) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547304‑4547442 | tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa < 1:1897192‑M1/11‑1 (MQ=255)tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa < 1:443597‑M1/11‑1 (MQ=255)gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAtt < 1:598603‑M1/71‑3 (MQ=255) gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact < 1:878940‑M1/71‑9 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca > 1:4457617‑M1/1‑60 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca > 1:2745191‑M1/1‑60 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca > 1:1455011‑M1/1‑58 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag < 1:2019365‑M1/70‑16 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag > 1:1816555‑M1/1‑55 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttt < 1:4467399‑M1/58‑4 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat > 1:3884794/1‑70 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:2641764‑M1/47‑70 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:1390754‑M1/70‑17 (MQ=255) tttgactgccaacactgcacagtttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:4097072‑M1/45‑60 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc < 1:2480339‑M1/12‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:57005‑M1/44‑70 (MQ=255) gactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:478646‑M1/43‑66 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata > 1:1984323‑M1/42‑70 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata > 1:4621570‑M1/42‑70 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:1242552‑M1/40‑49 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatc > 1:1472475‑M1/1‑46 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag > 1:2479485‑M1/1‑46 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 1:3120102/51‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtt < 1:3279383‑M1/44‑3 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:1125563‑M1/41‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:2108474‑M1/28‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:1176779‑M1/39‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCa < 1:1629063‑M1/23‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt < 1:3924269‑M1/40‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttg > 1:1511623‑M1/1‑40 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggaca < 1:256401‑M1/70‑32 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt > 1:3851432‑M1/29‑71 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttc < 1:669172/70‑2 (MQ=255) agttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTatttttc < 1:615561‑M1/44‑2 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGAGGCCAttttgactcatagaggaaag < 1:3848030‑M1/54‑21 (MQ=255) ttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat > 1:1587973‑M1/24‑51 (MQ=255) ttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat > 1:3476636‑M1/24‑51 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:3152618‑M1/42‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAg < 1:309595‑M1/49‑1 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCa < 1:191691/38‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt > 1:3437645‑M1/1‑27 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACgtatttttctc > 1:4554373‑M1/17‑59 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta < 1:1560549‑M1/71‑47 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta < 1:3466716‑M1/71‑47 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATaaa > 1:3601306‑M1/16‑70 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCata < 1:1728138/39‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGtatttttct < 1:3082884‑M1/45‑3 (MQ=255) aataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttattt < 1:4474223‑M1/70‑50 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:3997757/70‑1 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcat < 1:456839‑M1/43‑24 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttca > 1:4066476‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:117324/1‑63 (MQ=255) aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:3185690‑M1/1‑16 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:2829266/1‑70 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgtggacaaactttttcagtttatttgttggct > 1:2900296‑M1/1‑14 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgtctt < 1:359857‑M1/71‑58 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct > 1:4094818‑M1/1‑14 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:4630371‑M1/38‑1 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:457879‑M1/38‑1 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:2049638‑M1/6‑71 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTaaaaaa < 1:2508541‑M1/67‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta < 1:1286937‑M1/71‑59 (MQ=255) cAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:916251‑M1/71‑60 (MQ=255) cAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcg > 1:4099517‑M1/1‑12 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:507033/71‑1 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata < 1:1671328‑M1/59‑1 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATa > 1:3350713‑M1/1‑52 (MQ=255) tGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa > 1:3130571‑M1/2‑71 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTAAAAAACGACaa > 1:3718404‑M1/1‑70 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:2911477‑M1/1‑71 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:107943‑M1/1‑71 (MQ=255) attttgactcatagaggaaagcatggcggacaaactttttcagtttattt < 1:2516936‑M1/50‑50 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgt > 1:2653107‑M1/1‑1 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTAttttt > 1:1474219‑M1/1‑35 (MQ=255) | GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547304‑4547442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |