| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 57 (1.270) | 37/94 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 159 total aligned reads displayed.
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 | aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:4415581‑M2/71‑1 (MQ=255)aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:3923684‑M2/71‑1 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:1870163‑M2/1‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:1344165‑M2/66‑71 (MQ=255) ccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg > 1:3827953‑M2/63‑69 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:2596218‑M2/9‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1250980‑M2/9‑1 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:2451280‑M2/11‑1 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:3615278‑M2/11‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:3657742‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:2958653‑M2/63‑2 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:331066‑M2/1‑61 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc < 1:2155902‑M2/15‑1 (MQ=255) tGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:3643227‑M2/69‑11 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc > 1:3204425‑M2/54‑60 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:103534‑M2/9‑1 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:2080146‑M2/70‑15 (MQ=255) tgaaaagaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:2367‑M2/52‑71 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:2511596‑M2/51‑71 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1141631‑M2/21‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:269385‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca > 1:3938225‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:3780283‑M2/52‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1409792‑M2/71‑24 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgg < 1:4046493‑M2/70‑23 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:4225362‑M2/69‑22 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:4542920‑M2/52‑5 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:2241489‑M2/53‑7 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:4240125‑M2/51‑6 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:160885‑M2/43‑70 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:155467‑M2/43‑70 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:4164273‑M2/30‑1 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2792117‑M2/71‑28 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:2318119‑M2/32‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:1561983‑M2/40‑70 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:790289‑M2/1‑42 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttagcagcaatag < 1:3004094‑M2/59‑19 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:3176007‑M2/1‑41 (MQ=255) cgcttaggcctgtgtccatattacgagggtaggatcACACttcgg > 1:2324240‑M2/37‑43 (MQ=255) taggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:1343807‑M2/33‑70 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:4098103‑M2/40‑5 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTagag > 1:1940006‑M2/32‑45 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTaga > 1:2412595‑M2/32‑44 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:682993‑M2/1‑34 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:674889‑M2/24‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca < 1:3284332‑M2/45‑13 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtg < 1:3362962‑M2/35‑3 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat > 1:3475850‑M2/1‑32 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:276348‑M2/28‑71 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:73430‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:51560‑M2/40‑11 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:4340790‑M2/36‑7 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1739033‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:2556039‑M2/1‑29 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2599855‑M2/25‑50 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:4355562‑M2/1‑27 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1337242‑M2/43‑17 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:588979‑M2/23‑70 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc < 1:2035327‑M2/49‑1 (MQ=255) aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc > 1:1773624‑M2/1‑23 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:3539367‑M2/24‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:3065167‑M2/19‑44 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:186331‑M2/21‑1 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa < 1:287942‑M2/34‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:131506‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:88324‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:3836790‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:773929‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCCAAGCCTTTGTCAGCGtt > 1:198837‑M2/17‑71 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2916230‑M2/16‑41 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:2102342‑M2/15‑65 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:1560618‑M2/59‑1 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatag > 1:4604553‑M2/1‑16 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2143575‑M2/12‑37 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc > 1:3113108‑M2/12‑70 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGACAGGAGTGATcaagccga > 1:2444725‑M2/11‑49 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:3335051‑M2/62‑1 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:987021‑M2/1‑13 (MQ=255) gtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtt > 1:3936533‑M2/9‑71 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:405369‑M2/44‑35 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:551146‑M2/44‑35 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:3722494‑M2/7‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:404376‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:873292‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:3116322‑M2/1‑9 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:455107‑M2/1‑7 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:1054332‑M2/43‑1 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:4596711‑M2/1‑6 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaagtgagtaaact < 1:1130612‑M2/48‑46 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:1191019‑M2/1‑71 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:2394959‑M2/56‑54 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:3594481‑M2/56‑54 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:1997337/71‑1 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:2569384‑M2/71‑70 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:2098593‑M2/71‑70 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:3189697‑M2/45‑44 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa > 1:1169062/1‑38 (MQ=255) ctgatcttacccagcaatagtggacacgcgtctaagtgagtaaactctcagtcag > 1:3262025‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca > 1:3704252‑M2/1‑1 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:1565322/1‑69 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |