| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 42 (0.910) | 23/96 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 105 total aligned reads displayed.
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > W3110S.gb/3932864‑3932993 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:1244857‑M2/1‑70 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:3112461‑M2/1‑69 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:3704426‑M2/1‑68 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:1433789‑M2/1‑68 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:1119792‑M2/71‑4 (MQ=255) gagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc > 1:1790506‑M2/63‑71 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:1292597‑M2/71‑10 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2981069‑M2/67‑6 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:4635169‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:4586097‑M2/60‑6 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3341120‑M2/22‑1 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3363235‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:4501081‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:4556495‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2233520‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3805881‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2594977‑M2/1‑53 (MQ=255) tgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:4318608‑M2/49‑70 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:4111109‑M2/47‑54 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa < 1:1298441‑M2/24‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:43591‑M2/47‑71 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:2468094‑M2/25‑1 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt > 1:1207741‑M2/46‑71 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:59558‑M2/71‑24 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:2822314‑M2/57‑10 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:3989172‑M2/52‑5 (MQ=255) ccGCTTTATAACCGTATGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:117809‑M2/71‑24 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1051486‑M2/29‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCTAAGTGtgatcctacc < 1:4463827‑M2/56‑11 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:400477‑M2/1‑46 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:366774‑M2/65‑20 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1150340‑M2/41‑69 (MQ=255) actcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa < 1:4016040‑M2/31‑1 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:374299‑M2/33‑1 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3591198‑M2/33‑1 (MQ=255) tcacttagccgcgtgtcgactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:31157‑M2/33‑1 (MQ=255) tcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:2985508‑M2/8‑1 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:882165‑M2/71‑31 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:1179280‑M2/63‑24 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:2872822‑M2/63‑26 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:2527142‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1243556‑M2/33‑70 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc > 1:821127‑M2/32‑68 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4151561‑M2/32‑69 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:522198‑M2/1‑34 (MQ=255) agccgcgtgtccactattgctggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg > 1:3172365‑M2/31‑62 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2527741‑M2/1‑32 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATcc > 1:4219794‑M2/29‑36 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATcc > 1:2584459‑M2/29‑36 (MQ=255) ggTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:4282874‑M2/1‑31 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAACTCAGCGAAGAc < 1:3904947‑M2/43‑1 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:4420631‑M2/1‑29 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac > 1:3898153‑M2/1‑29 (MQ=255) agtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGa < 1:1233232‑M2/21‑1 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:1338084‑M2/71‑45 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:1048146‑M2/66‑40 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:3184491‑M2/66‑40 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:1696529‑M2/46‑20 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:2277150‑M2/23‑70 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcct > 1:3765527‑M2/1‑24 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2225495‑M2/1‑24 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3919606‑M2/1‑24 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:3168099‑M2/21‑71 (MQ=255) actattgctgggttagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:3655515‑M2/52‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacagaggcctaagcgag < 1:3047071‑M2/61‑40 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:3769407‑M2/27‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:3964465‑M2/27‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:613727‑M2/40‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:4318480‑M2/18‑71 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:3275425‑M2/71‑51 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:4220493‑M2/71‑51 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCa > 1:2541169‑M2/17‑51 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:1718632‑M2/70‑51 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa < 1:2536462‑M2/24‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:1116389‑M2/54‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGAGAAGACGGTAAAACCtata > 1:781587‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGGCAGCGAAGACGGTAAAACCta < 1:585071‑M2/54‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCGCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:3144939‑M2/54‑1 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1065297‑M2/1‑19 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:3334873‑M2/14‑55 (MQ=255) ggCACGACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgagg < 1:2304918‑M2/55‑41 (MQ=255) gggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1189753‑M2/29‑1 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattg < 1:2518978‑M2/71‑58 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattg > 1:3716472‑M2/1‑14 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc < 1:4076948‑M2/62‑1 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgt > 1:1111468‑M2/1‑13 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa > 1:4553079‑M2/9‑39 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1041459‑M2/52‑1 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:3115576‑M2/52‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:2168597‑M2/8‑71 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc > 1:433810‑M2/1‑11 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaa > 1:3914378‑M2/1‑11 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:2239525‑M2/1‑11 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggaca > 1:4113359‑M2/1‑10 (MQ=255) aagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1873123‑M2/40‑1 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3286279‑M2/6‑59 (MQ=255) cAGTGATCGCGGGCCTCGCTGAAAAGTGGGAAGTc > 1:1064018‑M2/2‑35 (MQ=255) cAGAGATCCCGGGCCTCGCTGAAAAGTGCGAAGTCAGCGAAGAc > 1:713456‑M2/2‑44 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:3538934/38‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:3586879/38‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > W3110S.gb/3932864‑3932993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |