Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 579,625 A→G 15.4% intergenic (+316/‑432) ybcW → / → nohB hypothetical protein/DNA packaging protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb579,6250AG15.4% 57.3 / 5.2 26intergenic (+316/‑432)ybcW/nohBhypothetical protein/DNA packaging protein
Reads supporting (aligned to +/- strand):  ref base A (10/12);  new base G (2/2);  total (12/14)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01

TTAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTCAGTGTCG  >  W3110S.gb/579592‑579692
                                 |                                                                   
ttAATTTGTTCAATCATTTGGTTAGGAAAGCGGGTGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGt                                >  1:3609839/1‑71 (MQ=21)
ttAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAg                                 >  1:4008106/1‑70 (MQ=33)
 tAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGt                                >  1:3075321/1‑70 (MQ=35)
  aaTTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGtt                               >  1:244274/1‑70 (MQ=35)
   aTTTGTTCAATCATTTGGTTAGGAAAGCGGGTGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGa                             <  1:69874/71‑1 (MQ=21)
   aTTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGa                             <  1:1814691/71‑1 (MQ=34)
   aTTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGa                             <  1:3822565/71‑1 (MQ=34)
   aTTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGa                             <  1:3370304/71‑1 (MQ=34)
   aTTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTATGTTCTTAGTTGa                             <  1:1549908/71‑1 (MQ=21)
             tCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAg                       <  1:4217046/67‑1 (MQ=35)
               aTTTGGTTAGGAAAGCGGGTGTTGCGGGTTGTTGTTATGCGGGTTCTGTTCTTAGTTGACATGAGGTTGcc                 >  1:3420153/1‑71 (MQ=255)
               aTTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGcc                 >  1:3787231/1‑71 (MQ=34)
                tttGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGtt                               <  1:3846624/56‑1 (MQ=35)
                 ttGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGcccc               >  1:510973/1‑71 (MQ=34)
                 ttGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGcccc               >  1:718340/1‑71 (MQ=34)
                     ttAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGa                             <  1:1958522/53‑1 (MQ=35)
                        ggAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTc         <  1:3492317/70‑1 (MQ=35)
                          aaaGCGGGTGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTCAgt      <  1:2838814/71‑1 (MQ=21)
                          aaaGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACAt                          <  1:2348923/51‑1 (MQ=35)
                          aaaGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTCAgt      >  1:4452499/1‑71 (MQ=34)
                           aaGCGGATGTTGCGGGTTGTTGTTCTGAGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTCAgtg     >  1:3342671/1‑71 (MQ=21)
                            aGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGAc                            <  1:1994187/47‑1 (MQ=38)
                              cGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGGCCCGTATTCAGTGTCg  >  1:2748262/1‑71 (MQ=21)
                              cGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTCAGTGTc   >  1:3299730/1‑70 (MQ=35)
                               ggATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTg                              <  1:3584358/42‑1 (MQ=38)
                                gATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGt             <  1:251760/58‑1 (MQ=35)
                                 |                                                                   
TTAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTAGTTGACATGAGGTTGCCCCGTATTCAGTGTCG  >  W3110S.gb/579592‑579692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: